Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 MISP-201ENST00000215582 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SHOX2O60902 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.45□□□□□ -0.1
SHOX2O60902 PNMA5-204ENST00000452693 3113 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.1
SHOX2O60902 ENG-201ENST00000344849 3059 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 FAM58DP-201ENST00000428076 619 ntBASIC14.45□□□□□ -0.1
SHOX2O60902 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 AC005237.2-201ENST00000434368 219 ntBASIC14.45□□□□□ -0.1
SHOX2O60902 TNRC18P1-201ENST00000502875 3650 ntBASIC14.45□□□□□ -0.1
SHOX2O60902 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
SHOX2O60902 SRP72-205ENST00000510663 2473 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 PGAM5P1-201ENST00000518923 814 ntBASIC14.45□□□□□ -0.1
SHOX2O60902 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.45□□□□□ -0.1
SHOX2O60902 AL079307.3-201ENST00000556114 283 ntBASIC14.45□□□□□ -0.1
SHOX2O60902 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.45□□□□□ -0.1
SHOX2O60902 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SHOX2O60902 AL033527.5-202ENST00000641632 1098 ntBASIC14.45□□□□□ -0.1
SHOX2O60902 CIZ1-205ENST00000372948 2858 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
SHOX2O60902 ORMDL2-201ENST00000243045 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC14.45□□□□□ -0.1
SHOX2O60902 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC14.45□□□□□ -0.1
SHOX2O60902 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.45□□□□□ -0.1
SHOX2O60902 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 FBLN1-208ENST00000442170 2531 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC14.45□□□□□ -0.1
SHOX2O60902 ZNF564-201ENST00000339282 2935 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHOX2O60902 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.45□□□□□ -0.1
SHOX2O60902 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
SHOX2O60902 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
SHOX2O60902 ZNF502-203ENST00000436624 2314 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 NOP2-212ENST00000541778 3038 ntTSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 CAST-223ENST00000508608 2425 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 SPINT1-201ENST00000344051 3056 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 PAX3-205ENST00000392069 3170 ntTSL 5 BASIC14.44□□□□□ -0.1
SHOX2O60902 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC14.44□□□□□ -0.1
SHOX2O60902 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.44□□□□□ -0.1
SHOX2O60902 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
SHOX2O60902 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.44□□□□□ -0.1
SHOX2O60902 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.44□□□□□ -0.1
SHOX2O60902 ALG1L8P-201ENST00000533887 760 ntBASIC14.44□□□□□ -0.1
SHOX2O60902 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.44□□□□□ -0.1
SHOX2O60902 AC003101.2-201ENST00000612557 442 ntBASIC14.44□□□□□ -0.1
SHOX2O60902 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
SHOX2O60902 AC004461.2-201ENST00000629517 803 ntBASIC14.44□□□□□ -0.1
SHOX2O60902 AL355336.1-201ENST00000451355 1676 ntTSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 AC000068.1-201ENST00000431090 2097 ntTSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 TJAP1-201ENST00000259751 2720 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 PRTFDC1-201ENST00000320152 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 SETD3-204ENST00000436070 2592 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 DUSP11-202ENST00000443070 2175 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
SHOX2O60902 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 GLB1L-203ENST00000409640 2042 ntTSL 2 BASIC14.44□□□□□ -0.1
SHOX2O60902 TSN-201ENST00000389682 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC14.44□□□□□ -0.1
SHOX2O60902 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC14.44□□□□□ -0.1
SHOX2O60902 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SHOX2O60902 AC010536.1-201ENST00000538868 2611 ntBASIC14.44□□□□□ -0.1
SHOX2O60902 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SHOX2O60902 AL138799.1-201ENST00000448213 1675 ntBASIC14.43□□□□□ -0.1
SHOX2O60902 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SHOX2O60902 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 XRCC3-202ENST00000553264 3018 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SHOX2O60902 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.43□□□□□ -0.1
SHOX2O60902 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC14.43□□□□□ -0.1
SHOX2O60902 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 IMP4-203ENST00000409935 958 ntTSL 5 BASIC14.43□□□□□ -0.1
SHOX2O60902 ARSEP1-201ENST00000420443 635 ntBASIC14.43□□□□□ -0.1
SHOX2O60902 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.43□□□□□ -0.1
SHOX2O60902 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 CEND1P1-201ENST00000451006 455 ntBASIC14.43□□□□□ -0.1
SHOX2O60902 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms