Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 SORD2P-201ENST00000558556 1069 ntBASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 HPN-206ENST00000597419 1212 ntTSL 5 BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 AL109837.1-201ENST00000603272 613 ntBASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 AL805961.1-201ENST00000642026 753 ntBASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 HPD-204ENST00000543163 1709 ntTSL 5 BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC17.48■□□□□ 0.39
RPAP1Q9BWH6 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 AC026803.1-201ENST00000569130 274 ntBASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 MIR3188-201ENST00000583494 85 ntBASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 AC138894.2-201ENST00000602838 371 ntBASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC17.47■□□□□ 0.39
RPAP1Q9BWH6 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 AC018629.1-201ENST00000623381 1736 ntBASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 MBP-227ENST00000526111 581 ntTSL 4 BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 PHBP15-201ENST00000574228 665 ntBASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 WDR7-208ENST00000589935 544 ntTSL 4 BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 AC089987.1-201ENST00000551654 2209 ntBASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RPAP1Q9BWH6 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
RPAP1Q9BWH6 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.38
RPAP1Q9BWH6 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 CAP2P1-201ENST00000557743 1390 ntBASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 STK26-204ENST00000481105 1835 ntTSL 2 BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RPAP1Q9BWH6 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms