Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 APPBP2-201ENST00000083182 6478 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AP3S2-201ENST00000336418 5891 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 VPS39-201ENST00000318006 4844 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 RGL1-202ENST00000360851 4724 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 FAM160A1-201ENST00000435205 4576 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 VDR-208ENST00000550325 3925 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 ILF3-202ENST00000407004 3671 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 LIG1-201ENST00000263274 3384 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 DPP3-215ENST00000541961 2676 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AC010969.1-201ENST00000340444 2412 ntTSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 BLZF1-201ENST00000329281 2300 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 HIST1H2BH-201ENST00000619466 2060 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 TRIM31-210ENST00000376734 2043 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 RIMKLA-202ENST00000431473 8909 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 CAMSAP1-202ENST00000389532 7696 ntAPPRIS P2 TSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 DRAXIN-201ENST00000294485 7346 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 MTHFR-202ENST00000376583 7044 ntAPPRIS ALT1 TSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 CADM2-201ENST00000383699 9488 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 SLC25A6P2-201ENST00000497974 877 ntBASIC8.92□□□□□ -0.98
LINC00643Q86TS7 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 JPT2-214ENST00000569765 782 ntTSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 MIR3909-201ENST00000579518 119 ntBASIC8.92□□□□□ -0.98
LINC00643Q86TS7 CD177P1-201ENST00000606252 935 ntBASIC8.92□□□□□ -0.98
LINC00643Q86TS7 BAP1-211ENST00000615113 489 ntBASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 BIVM-202ENST00000448849 3198 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 HGSNAT-201ENST00000379644 5236 ntAPPRIS P1 TSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 TF-201ENST00000402696 2968 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AC096564.1-201ENST00000499098 2810 ntTSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AC008764.8-201ENST00000623966 2717 ntBASIC8.92□□□□□ -0.98
LINC00643Q86TS7 ST3GAL1-211ENST00000522652 2580 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AL928654.5-201ENST00000624831 2501 ntBASIC8.92□□□□□ -0.98
LINC00643Q86TS7 ARHGAP36-202ENST00000370921 2447 ntTSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 SUCLG2-201ENST00000307227 2352 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 PHACTR3-205ENST00000395636 2372 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 DPY19L2P3-201ENST00000414296 2326 ntBASIC8.92□□□□□ -0.98
LINC00643Q86TS7 NLGN3-205ENST00000536169 3863 ntAPPRIS ALT1 TSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AC092123.2-201ENST00000611189 5421 ntBASIC8.92□□□□□ -0.98
LINC00643Q86TS7 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 LNP1-201ENST00000383693 2210 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 CANX-209ENST00000504734 2232 ntAPPRIS P1 TSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 AC080013.1-204ENST00000607426 2185 ntBASIC8.92□□□□□ -0.98
LINC00643Q86TS7 LINC-PINT-208ENST00000451786 3505 ntTSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 GDPD2-205ENST00000538649 2067 ntTSL 2 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 KDM2B-219ENST00000611216 3434 ntTSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 GCN1-201ENST00000300648 8675 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 TRO-201ENST00000173898 4647 ntAPPRIS P4 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 SLC8B1-213ENST00000552014 3289 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 ACSL6-207ENST00000379264 6539 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 ASPH-203ENST00000379454 5268 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 MYL9-201ENST00000279022 2821 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 DDAH1-201ENST00000284031 3920 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 TMEM30A-203ENST00000475111 2791 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 FAM131A-211ENST00000639617 4450 ntTSL 5 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 IGSF11-202ENST00000393775 3495 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 RBM20-201ENST00000369519 7233 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 KRT8P37-201ENST00000451609 1420 ntBASIC8.91□□□□□ -0.98
LINC00643Q86TS7 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 MYH11-202ENST00000396324 6847 ntAPPRIS ALT1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 ZNF266-206ENST00000592292 3100 ntAPPRIS P1 TSL 5 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 AC129492.6-201ENST00000611383 1305 ntBASIC8.91□□□□□ -0.98
LINC00643Q86TS7 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 HDLBP-203ENST00000391975 6372 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms