RNA–Protein interactions for RNA: ENST00000550325.5

VDR-208, Transcript of vitamin D receptor, humanhuman

TSL 1 (best) BASIC

Gene VDR, Length 3,925 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VDR-208ENST00000550325 NISCHQ9Y2I1 1504 aa22.14■■□□□ 1.13
VDR-208ENST00000550325 SUPT5HO00267 1087 aaKnown RBP20.39■□□□□ 0.85
VDR-208ENST00000550325 SHROOM4Q9ULL8 1493 aa20.38■□□□□ 0.85
VDR-208ENST00000550325 HRCP23327 699 aa20.36■□□□□ 0.85
VDR-208ENST00000550325 PCGF6Q9BYE7 350 aa20.23■□□□□ 0.83
VDR-208ENST00000550325 PPARGC1BQ86YN6 1023 aaKnown RBP20.22■□□□□ 0.83
VDR-208ENST00000550325 CHIC1Q5VXU3 224 aa19.7■□□□□ 0.74
VDR-208ENST00000550325 MYO15BQ96JP2 1530 aa19.7■□□□□ 0.74
VDR-208ENST00000550325 PELP1Q8IZL8 1130 aaKnown RBP19.66■□□□□ 0.74
VDR-208ENST00000550325 DCAF8L2P0C7V8 631 aa19.62■□□□□ 0.73
VDR-208ENST00000550325 LOC105371045A0A1W2PR82 267 aa19.5■□□□□ 0.71
VDR-208ENST00000550325 SCAF1Q9H7N4 1312 aaKnown RBP19.37■□□□□ 0.69
VDR-208ENST00000550325 TRIM26Q12899 539 aaPredicted RBP19.32■□□□□ 0.68
VDR-208ENST00000550325 EHMT2Q96KQ7 1210 aa19.14■□□□□ 0.66
VDR-208ENST00000550325 ZEB1P37275 1124 aaPredicted RBP19.13■□□□□ 0.65
VDR-208ENST00000550325 DCAF1Q9Y4B6 1507 aa19.12■□□□□ 0.65
VDR-208ENST00000550325 CCDC180Q9P1Z9 1646 aa19.07■□□□□ 0.64
VDR-208ENST00000550325 FAM9AQ8IZU1 332 aaPredicted RBP18.97■□□□□ 0.63
VDR-208ENST00000550325 NEUROD1Q13562 356 aa18.88■□□□□ 0.61
VDR-208ENST00000550325 GTF3C3Q9Y5Q9 886 aa18.87■□□□□ 0.61
VDR-208ENST00000550325 ACIN1Q9UKV3 1341 aaKnown RBP18.87■□□□□ 0.61
VDR-208ENST00000550325 MYT1Q01538 1121 aa18.86■□□□□ 0.61
VDR-208ENST00000550325 ZCCHC6Q5VYS8 1495 aaKnown RBP18.77■□□□□ 0.6
VDR-208ENST00000550325 CENPBP07199 599 aaPredicted RBP18.76■□□□□ 0.59
VDR-208ENST00000550325 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.74■□□□□ 0.59
VDR-208ENST00000550325 CCER1Q8TC90 406 aaPredicted RBP18.73■□□□□ 0.59
VDR-208ENST00000550325 TRIM41Q8WV44 630 aa18.69■□□□□ 0.58
VDR-208ENST00000550325 YTHDC1Q96MU7 727 aaKnown RBP18.66■□□□□ 0.58
VDR-208ENST00000550325 TTBK1Q5TCY1 1321 aaPredicted RBP18.65■□□□□ 0.58
VDR-208ENST00000550325 DIEXFQ68CQ4 756 aaKnown RBP18.64■□□□□ 0.57
VDR-208ENST00000550325 ABCC9O60706 1549 aa18.3■□□□□ 0.52
VDR-208ENST00000550325 ZNF316A6NFI3 1004 aaPredicted RBP18.17■□□□□ 0.5
VDR-208ENST00000550325 MIER1Q8N108 512 aa18.14■□□□□ 0.49
VDR-208ENST00000550325 HNRNPUL2Q1KMD3 747 aaKnown RBP17.98■□□□□ 0.47
VDR-208ENST00000550325 RSF1Q96T23 1441 aaPredicted RBP17.97■□□□□ 0.47
VDR-208ENST00000550325 RB1CC1Q8TDY2 1594 aa17.91■□□□□ 0.46
VDR-208ENST00000550325 UBTFP17480 764 aaKnown RBP17.86■□□□□ 0.45
VDR-208ENST00000550325 BCL11AQ9H165 835 aa17.86■□□□□ 0.45
VDR-208ENST00000550325 SUPT16HQ9Y5B9 1047 aaKnown RBP17.81■□□□□ 0.44
VDR-208ENST00000550325 BCANQ96GW7 911 aa17.81■□□□□ 0.44
VDR-208ENST00000550325 ANP32EQ9BTT0 268 aa17.8■□□□□ 0.44
VDR-208ENST00000550325 PABPN1Q86U42 306 aaKnown RBP eCLIP17.76■□□□□ 0.43
VDR-208ENST00000550325 RANGAP1P46060 587 aaPredicted RBP17.75■□□□□ 0.43
VDR-208ENST00000550325 SCRIBQ14160 1630 aa17.75■□□□□ 0.43
VDR-208ENST00000550325 TSHZ2Q9NRE2 1034 aa17.73■□□□□ 0.43
VDR-208ENST00000550325 CSRNP3Q8WYN3 585 aa17.7■□□□□ 0.42
VDR-208ENST00000550325 UNC13AQ9UPW8 1703 aa17.66■□□□□ 0.42
VDR-208ENST00000550325 CEP162Q5TB80 1403 aa17.66■□□□□ 0.42
VDR-208ENST00000550325 APLP2Q06481 763 aa17.62■□□□□ 0.41
VDR-208ENST00000550325 FKBP8Q14318 412 aa17.53■□□□□ 0.4
VDR-208ENST00000550325 CECR2Q9BXF3 1484 aa17.52■□□□□ 0.4
VDR-208ENST00000550325 CLSPNQ9HAW4 1339 aa17.52■□□□□ 0.4
VDR-208ENST00000550325 WRNQ14191 1432 aaPredicted RBP eCLIP17.49■□□□□ 0.39
VDR-208ENST00000550325 KCNH8Q96L42 1107 aa17.47■□□□□ 0.39
VDR-208ENST00000550325 ITGAEP38570 1179 aa17.46■□□□□ 0.39
VDR-208ENST00000550325 SOGA1O94964 1423 aa17.46■□□□□ 0.39
VDR-208ENST00000550325 NEFLP07196 543 aa17.44■□□□□ 0.38
VDR-208ENST00000550325 CCDC88BA6NC98 1476 aa17.44■□□□□ 0.38
VDR-208ENST00000550325 TNIKQ9UKE5 1360 aa17.43■□□□□ 0.38
VDR-208ENST00000550325 ABCC8Q09428 1581 aa17.42■□□□□ 0.38
VDR-208ENST00000550325 MROH2BQ7Z745 1585 aa17.42■□□□□ 0.38
VDR-208ENST00000550325 ERICH6Q7L0X2 663 aa17.41■□□□□ 0.38
VDR-208ENST00000550325 RBM19Q9Y4C8 960 aaKnown RBP17.37■□□□□ 0.37
VDR-208ENST00000550325 WIZO95785 1651 aa17.36■□□□□ 0.37
VDR-208ENST00000550325 NACADO15069 1562 aa17.33■□□□□ 0.37
VDR-208ENST00000550325 RUSC2Q8N2Y8 1516 aa17.32■□□□□ 0.36
VDR-208ENST00000550325 TRIM52Q96A61 297 aa17.3■□□□□ 0.36
VDR-208ENST00000550325 DDX10Q13206 875 aaKnown RBP17.27■□□□□ 0.36
VDR-208ENST00000550325 GOLGA3Q08378 1498 aa17.22■□□□□ 0.35
VDR-208ENST00000550325 CLIP1P30622 1438 aa17.22■□□□□ 0.35
VDR-208ENST00000550325 HIRIP3Q9BW71 556 aaPredicted RBP17.21■□□□□ 0.35
VDR-208ENST00000550325 IRX6P78412 446 aaPredicted RBP17.19■□□□□ 0.34
VDR-208ENST00000550325 DHX57Q6P158 1386 aaKnown RBP17.18■□□□□ 0.34
VDR-208ENST00000550325 BICRAQ9NZM4 1560 aa17.17■□□□□ 0.34
VDR-208ENST00000550325 MSH5O43196 834 aa17.14■□□□□ 0.33
VDR-208ENST00000550325 CDK11AQ9UQ88 783 aaPredicted RBP17.09■□□□□ 0.33
VDR-208ENST00000550325 EEA1Q15075 1411 aa17.09■□□□□ 0.33
VDR-208ENST00000550325 VPS8Q8N3P4 1428 aa17.08■□□□□ 0.32
VDR-208ENST00000550325 ANP32CO43423 234 aa17.05■□□□□ 0.32
VDR-208ENST00000550325 KANK4Q5T7N3 995 aaPredicted RBP17.05■□□□□ 0.32
VDR-208ENST00000550325 BAZ1AQ9NRL2 1556 aaPredicted RBP17.04■□□□□ 0.32
VDR-208ENST00000550325 PRKCSHP14314 528 aaPredicted RBP17.03■□□□□ 0.32
VDR-208ENST00000550325 NBR1Q14596 966 aa17.02■□□□□ 0.31
VDR-208ENST00000550325 CEP164Q9UPV0 1460 aa17■□□□□ 0.31
VDR-208ENST00000550325 SIN3AQ96ST3 1273 aa17■□□□□ 0.31
VDR-208ENST00000550325 DEKP35659 375 aaKnown RBP16.99■□□□□ 0.31
VDR-208ENST00000550325 EIF4G1Q04637 1599 aaKnown RBP16.99■□□□□ 0.31
VDR-208ENST00000550325 HNRNPUQ00839 825 aaKnown RBP eCLIP16.97■□□□□ 0.31
VDR-208ENST00000550325 RAPGEF2Q9Y4G8 1499 aa16.92■□□□□ 0.3
VDR-208ENST00000550325 FAM50AQ14320 339 aaKnown RBP16.9■□□□□ 0.3
VDR-208ENST00000550325 ATP1B4Q9UN42 357 aaPredicted RBP16.9■□□□□ 0.3
VDR-208ENST00000550325 TOP2AP11388 1531 aaKnown RBP16.88■□□□□ 0.29
VDR-208ENST00000550325 FANCIQ9NVI1 1328 aa16.87■□□□□ 0.29
VDR-208ENST00000550325 SMARCA2P51531 1590 aa16.87■□□□□ 0.29
VDR-208ENST00000550325 ANO8Q9HCE9 1232 aaPredicted RBP16.84■□□□□ 0.29
VDR-208ENST00000550325 KIF21BO75037 1637 aa16.83■□□□□ 0.29
VDR-208ENST00000550325 RAB3GAP2Q9H2M9 1393 aa16.83■□□□□ 0.29
VDR-208ENST00000550325 B4GALNT3Q6L9W6 998 aa16.83■□□□□ 0.28
VDR-208ENST00000550325 PPP1R15AO75807 674 aaPredicted RBP16.82■□□□□ 0.28
VDR-208ENST00000550325 CCNB3Q8WWL7 1395 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms