Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.76
RPL39P62891 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
RPL39P62891 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
RPL39P62891 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC10.29□□□□□ -0.76
RPL39P62891 AC087499.5-201ENST00000452760 1342 ntBASIC10.29□□□□□ -0.76
RPL39P62891 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
RPL39P62891 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC10.29□□□□□ -0.76
RPL39P62891 KHSRPP1-201ENST00000427983 1768 ntBASIC10.29□□□□□ -0.76
RPL39P62891 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
RPL39P62891 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC10.29□□□□□ -0.76
RPL39P62891 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
RPL39P62891 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC10.29□□□□□ -0.76
RPL39P62891 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC10.28□□□□□ -0.76
RPL39P62891 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
RPL39P62891 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 AC139712.1-201ENST00000378256 1875 ntBASIC10.28□□□□□ -0.76
RPL39P62891 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
RPL39P62891 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC10.28□□□□□ -0.76
RPL39P62891 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 AL139400.1-201ENST00000366220 510 ntBASIC10.28□□□□□ -0.76
RPL39P62891 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC10.28□□□□□ -0.76
RPL39P62891 FABP5-202ENST00000396359 986 ntTSL 5 BASIC10.28□□□□□ -0.76
RPL39P62891 LSM5-207ENST00000410044 687 ntTSL 3 BASIC10.28□□□□□ -0.76
RPL39P62891 AC114501.2-201ENST00000439631 535 ntBASIC10.28□□□□□ -0.76
RPL39P62891 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC10.28□□□□□ -0.76
RPL39P62891 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC10.28□□□□□ -0.76
RPL39P62891 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC10.28□□□□□ -0.76
RPL39P62891 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 AC093813.1-201ENST00000605066 256 ntBASIC10.28□□□□□ -0.76
RPL39P62891 AL844908.2-201ENST00000609461 460 ntBASIC10.28□□□□□ -0.76
RPL39P62891 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC10.28□□□□□ -0.76
RPL39P62891 HOTTIP_1.1-201ENST00000620415 57 ntBASIC10.28□□□□□ -0.76
RPL39P62891 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC10.28□□□□□ -0.76
RPL39P62891 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC10.28□□□□□ -0.76
RPL39P62891 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC10.28□□□□□ -0.76
RPL39P62891 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
RPL39P62891 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC10.27□□□□□ -0.76
RPL39P62891 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
RPL39P62891 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
RPL39P62891 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.76
RPL39P62891 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC10.27□□□□□ -0.76
RPL39P62891 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC10.27□□□□□ -0.76
RPL39P62891 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC10.27□□□□□ -0.76
RPL39P62891 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC10.27□□□□□ -0.76
RPL39P62891 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
RPL39P62891 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC10.27□□□□□ -0.76
RPL39P62891 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC10.27□□□□□ -0.76
RPL39P62891 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC10.27□□□□□ -0.76
RPL39P62891 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC10.27□□□□□ -0.76
RPL39P62891 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC10.27□□□□□ -0.76
RPL39P62891 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.76
RPL39P62891 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
RPL39P62891 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
RPL39P62891 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC10.27□□□□□ -0.77
RPL39P62891 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms