Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
SOX2P48431 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
SOX2P48431 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
SOX2P48431 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SOX2P48431 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC12.83□□□□□ -0.36
SOX2P48431 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SOX2P48431 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
SOX2P48431 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SOX2P48431 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
SOX2P48431 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
SOX2P48431 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
SOX2P48431 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC12.82□□□□□ -0.36
SOX2P48431 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
SOX2P48431 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
SOX2P48431 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
SOX2P48431 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
SOX2P48431 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC12.82□□□□□ -0.36
SOX2P48431 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
SOX2P48431 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC12.82□□□□□ -0.36
SOX2P48431 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC12.82□□□□□ -0.36
SOX2P48431 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC12.82□□□□□ -0.36
SOX2P48431 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 REEP4-207ENST00000523293 913 ntTSL 3 BASIC12.82□□□□□ -0.36
SOX2P48431 CALM1-205ENST00000553542 877 ntTSL 5 BASIC12.82□□□□□ -0.36
SOX2P48431 AC103988.2-201ENST00000561804 725 ntBASIC12.82□□□□□ -0.36
SOX2P48431 AP005019.2-201ENST00000615104 511 ntBASIC12.82□□□□□ -0.36
SOX2P48431 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
SOX2P48431 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC12.82□□□□□ -0.36
SOX2P48431 AGER-206ENST00000375070 1463 ntTSL 5 BASIC12.82□□□□□ -0.36
SOX2P48431 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
SOX2P48431 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC12.82□□□□□ -0.36
SOX2P48431 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC12.82□□□□□ -0.36
SOX2P48431 TUBB8P4-201ENST00000511806 1324 ntBASIC12.82□□□□□ -0.36
SOX2P48431 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC12.82□□□□□ -0.36
SOX2P48431 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SOX2P48431 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC12.82□□□□□ -0.36
SOX2P48431 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.81□□□□□ -0.36
SOX2P48431 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC12.81□□□□□ -0.36
SOX2P48431 KHSRPP1-201ENST00000427983 1768 ntBASIC12.81□□□□□ -0.36
SOX2P48431 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
SOX2P48431 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SOX2P48431 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SOX2P48431 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
SOX2P48431 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC12.81□□□□□ -0.36
SOX2P48431 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
SOX2P48431 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 ACTBP8-201ENST00000403258 1108 ntBASIC12.81□□□□□ -0.36
SOX2P48431 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC12.81□□□□□ -0.36
SOX2P48431 MRPS18AP1-201ENST00000414458 589 ntBASIC12.81□□□□□ -0.36
SOX2P48431 AL442647.2-201ENST00000429864 857 ntBASIC12.81□□□□□ -0.36
SOX2P48431 METTL21AP1-201ENST00000438852 635 ntBASIC12.81□□□□□ -0.36
SOX2P48431 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 TMPRSS11CP-201ENST00000453277 683 ntBASIC12.81□□□□□ -0.36
SOX2P48431 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC12.81□□□□□ -0.36
SOX2P48431 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC12.81□□□□□ -0.36
SOX2P48431 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC12.81□□□□□ -0.36
SOX2P48431 AC055876.2-201ENST00000531834 546 ntBASIC12.81□□□□□ -0.36
SOX2P48431 VPS18-202ENST00000558474 873 ntTSL 3 BASIC12.81□□□□□ -0.36
SOX2P48431 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
SOX2P48431 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms