Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CDX1P47902 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
CDX1P47902 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
CDX1P47902 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CDX1P47902 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.5
CDX1P47902 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC11.96□□□□□ -0.5
CDX1P47902 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
CDX1P47902 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC11.95□□□□□ -0.5
CDX1P47902 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
CDX1P47902 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC11.95□□□□□ -0.5
CDX1P47902 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 USE1-206ENST00000595101 1776 ntTSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
CDX1P47902 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
CDX1P47902 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC11.95□□□□□ -0.5
CDX1P47902 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC11.95□□□□□ -0.5
CDX1P47902 AC114812.1-204ENST00000449669 728 ntBASIC11.95□□□□□ -0.5
CDX1P47902 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC11.95□□□□□ -0.5
CDX1P47902 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC11.95□□□□□ -0.5
CDX1P47902 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC11.95□□□□□ -0.5
CDX1P47902 RPL28-206ENST00000558752 671 ntTSL 3 BASIC11.95□□□□□ -0.5
CDX1P47902 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC11.95□□□□□ -0.5
CDX1P47902 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC11.95□□□□□ -0.5
CDX1P47902 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC11.95□□□□□ -0.5
CDX1P47902 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
CDX1P47902 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC11.95□□□□□ -0.5
CDX1P47902 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC11.95□□□□□ -0.5
CDX1P47902 TP73-213ENST00000604479 1623 ntTSL 5 BASIC11.95□□□□□ -0.5
CDX1P47902 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 BX324167.2-201ENST00000623717 3316 ntBASIC11.95□□□□□ -0.5
CDX1P47902 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC11.95□□□□□ -0.5
CDX1P47902 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC11.95□□□□□ -0.5
CDX1P47902 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CDX1P47902 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC11.94□□□□□ -0.5
CDX1P47902 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC11.94□□□□□ -0.5
CDX1P47902 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
CDX1P47902 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
CDX1P47902 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 AL031595.1-201ENST00000623969 4709 ntBASIC11.94□□□□□ -0.5
CDX1P47902 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
CDX1P47902 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
CDX1P47902 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC11.94□□□□□ -0.5
CDX1P47902 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC11.94□□□□□ -0.5
CDX1P47902 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
CDX1P47902 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms