Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.22■□□□□ 0.03
APOEP02649 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.22■□□□□ 0.03
APOEP02649 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.22■□□□□ 0.03
APOEP02649 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
APOEP02649 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
APOEP02649 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 AL157407.1-201ENST00000435784 904 ntBASIC15.22■□□□□ 0.03
APOEP02649 SERPINA13P-202ENST00000478994 924 ntBASIC15.22■□□□□ 0.03
APOEP02649 OARD1-212ENST00000482515 832 ntTSL 2 BASIC15.22■□□□□ 0.03
APOEP02649 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC15.22■□□□□ 0.03
APOEP02649 RBM8B-201ENST00000555532 525 ntBASIC15.22■□□□□ 0.03
APOEP02649 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
APOEP02649 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.22■□□□□ 0.03
APOEP02649 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.22■□□□□ 0.03
APOEP02649 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.22■□□□□ 0.03
APOEP02649 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
APOEP02649 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.22■□□□□ 0.03
APOEP02649 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
APOEP02649 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
APOEP02649 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
APOEP02649 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.21■□□□□ 0.03
APOEP02649 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.21■□□□□ 0.03
APOEP02649 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
APOEP02649 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.21■□□□□ 0.03
APOEP02649 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
APOEP02649 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.21■□□□□ 0.03
APOEP02649 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
APOEP02649 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC15.21■□□□□ 0.03
APOEP02649 KLF2P1-201ENST00000447438 1042 ntBASIC15.21■□□□□ 0.03
APOEP02649 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.21■□□□□ 0.03
APOEP02649 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
APOEP02649 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.21■□□□□ 0.03
APOEP02649 AC005740.2-201ENST00000511085 419 ntBASIC15.21■□□□□ 0.03
APOEP02649 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.21■□□□□ 0.03
APOEP02649 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.21■□□□□ 0.03
APOEP02649 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC15.21■□□□□ 0.03
APOEP02649 AC005962.1-201ENST00000584100 773 ntBASIC15.21■□□□□ 0.03
APOEP02649 BNIP3P13-201ENST00000599968 566 ntBASIC15.21■□□□□ 0.03
APOEP02649 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
APOEP02649 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.21■□□□□ 0.03
APOEP02649 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
APOEP02649 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
APOEP02649 BEND3P1-201ENST00000421591 1944 ntBASIC15.21■□□□□ 0.02
APOEP02649 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
APOEP02649 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
APOEP02649 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.21■□□□□ 0.02
APOEP02649 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.02
APOEP02649 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
APOEP02649 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC15.21■□□□□ 0.02
APOEP02649 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
APOEP02649 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.21■□□□□ 0.02
APOEP02649 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.02
APOEP02649 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
APOEP02649 AC092053.3-201ENST00000641308 4975 ntBASIC15.21■□□□□ 0.02
APOEP02649 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
APOEP02649 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
APOEP02649 MYADML-201ENST00000474610 2147 ntBASIC15.2■□□□□ 0.02
APOEP02649 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC15.2■□□□□ 0.02
APOEP02649 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
APOEP02649 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms