Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PTPRS-201ENST00000262963 4766 ntTSL 5 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 PTPRS-210ENST00000592099 4766 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 HERC6-203ENST00000380265 3781 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 CNGA3-203ENST00000393504 3841 ntAPPRIS P3 TSL 5 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 FYCO1-201ENST00000296137 8504 ntAPPRIS P2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 YPEL2-201ENST00000312655 5217 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 UBE2L3-204ENST00000545681 2932 ntTSL 2 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 AC005014.1-201ENST00000432006 2976 ntBASIC8.94□□□□□ -0.98
LINC00643Q86TS7 ACOT11-201ENST00000343744 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 MFAP4-201ENST00000299610 1873 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 MFAP4-203ENST00000497081 1876 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC8.94□□□□□ -0.98
LINC00643Q86TS7 PMEPA1-203ENST00000347215 4546 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 PMEPA1-205ENST00000395816 4519 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 GOLGA8EP-201ENST00000530246 1959 ntBASIC8.93□□□□□ -0.98
LINC00643Q86TS7 SLC38A1-202ENST00000439706 3436 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 DPF2-202ENST00000415073 2085 ntTSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 TSPEAR-203ENST00000613245 3524 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 SP3-201ENST00000310015 6359 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 PML-207ENST00000435786 3643 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 TTLL13P-206ENST00000641754 2256 ntAPPRIS ALT2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 ZAN-207ENST00000620596 8396 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 ZFHX2-AS1-201ENST00000553985 2322 ntTSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 WASHC5-201ENST00000318410 4187 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 MFSD11-201ENST00000336509 2538 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 GGPS1-202ENST00000358966 2740 ntAPPRIS P1 TSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 SLC13A2-202ENST00000444914 2855 ntTSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 UMPS-201ENST00000232607 6738 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 PDE4C-206ENST00000594465 2988 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 IKBKE-203ENST00000581977 3221 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 PRKCQ-201ENST00000263125 3285 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 MIEF1-201ENST00000325301 5625 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 TUSC5-201ENST00000333813 3596 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 SSR4P1-201ENST00000415143 412 ntBASIC8.93□□□□□ -0.98
LINC00643Q86TS7 AC004911.1-201ENST00000416316 871 ntBASIC8.93□□□□□ -0.98
LINC00643Q86TS7 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 CD81-212ENST00000526072 1172 ntTSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 CYB561-217ENST00000582997 877 ntTSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 LINC02084-201ENST00000606069 1096 ntBASIC8.93□□□□□ -0.98
LINC00643Q86TS7 AL390719.2-201ENST00000606993 987 ntBASIC8.93□□□□□ -0.98
LINC00643Q86TS7 AL662799.1-202ENST00000614205 422 ntBASIC8.93□□□□□ -0.98
LINC00643Q86TS7 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 WDR41-201ENST00000296679 3958 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 ZMYND11-203ENST00000381591 4229 ntAPPRIS P1 TSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 LINC00563-201ENST00000566370 1400 ntBASIC8.93□□□□□ -0.98
LINC00643Q86TS7 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 AC135012.1-201ENST00000563931 7430 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 AC012569.1-201ENST00000591191 1524 ntBASIC8.93□□□□□ -0.98
LINC00643Q86TS7 PSMC4-201ENST00000157812 1591 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 MSTO2P-201ENST00000314835 1709 ntBASIC8.93□□□□□ -0.98
LINC00643Q86TS7 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 AC015909.3-201ENST00000572855 1794 ntBASIC8.93□□□□□ -0.98
LINC00643Q86TS7 ATF4P4-201ENST00000393544 1930 ntBASIC8.93□□□□□ -0.98
LINC00643Q86TS7 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 EXOC7-207ENST00000411744 2031 ntAPPRIS ALT1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 DNAI2-202ENST00000446837 2474 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 RTN3-203ENST00000341307 2524 ntTSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 AC010547.1-201ENST00000500612 2793 ntTSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 STRA6-201ENST00000323940 2864 ntAPPRIS P1 TSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 GRIA4-202ENST00000393125 2994 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 EXTL2-207ENST00000535414 3146 ntTSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 MYO19-203ENST00000610930 3271 ntTSL 5 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 RALGDS-203ENST00000372062 3596 ntAPPRIS ALT2 TSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 TXNRD1-214ENST00000526691 3974 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 RTEL1-211ENST00000508582 4273 ntTSL 2 BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 TRIM37-201ENST00000262294 4330 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 EGR3-201ENST00000317216 4336 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.98
LINC00643Q86TS7 CEP170-203ENST00000366543 6727 ntTSL 5 BASIC8.92□□□□□ -0.98
LINC00643Q86TS7 ANXA11-202ENST00000372231 6720 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms