RNA–Protein interactions for RNA: ENST00000380265.9

HERC6-203, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 6, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HERC6, Length 3,781 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC6-203ENST00000380265 NISCHQ9Y2I1 1504 aa22.6■■□□□ 1.21
HERC6-203ENST00000380265 SHROOM4Q9ULL8 1493 aa20.54■□□□□ 0.88
HERC6-203ENST00000380265 SUPT5HO00267 1087 aaKnown RBP20.51■□□□□ 0.87
HERC6-203ENST00000380265 HRCP23327 699 aa20.38■□□□□ 0.85
HERC6-203ENST00000380265 PCGF6Q9BYE7 350 aa20.24■□□□□ 0.83
HERC6-203ENST00000380265 PPARGC1BQ86YN6 1023 aaKnown RBP20.14■□□□□ 0.81
HERC6-203ENST00000380265 CHIC1Q5VXU3 224 aa19.86■□□□□ 0.77
HERC6-203ENST00000380265 MYO15BQ96JP2 1530 aa19.8■□□□□ 0.76
HERC6-203ENST00000380265 DCAF8L2P0C7V8 631 aa19.64■□□□□ 0.73
HERC6-203ENST00000380265 PELP1Q8IZL8 1130 aaKnown RBP19.6■□□□□ 0.73
HERC6-203ENST00000380265 LOC105371045A0A1W2PR82 267 aa19.57■□□□□ 0.72
HERC6-203ENST00000380265 TRIM26Q12899 539 aaPredicted RBP19.42■□□□□ 0.7
HERC6-203ENST00000380265 DCAF1Q9Y4B6 1507 aa19.3■□□□□ 0.68
HERC6-203ENST00000380265 SCAF1Q9H7N4 1312 aaKnown RBP19.27■□□□□ 0.68
HERC6-203ENST00000380265 ZEB1P37275 1124 aaPredicted RBP19.25■□□□□ 0.67
HERC6-203ENST00000380265 ZCCHC6Q5VYS8 1495 aaKnown RBP19.16■□□□□ 0.66
HERC6-203ENST00000380265 EHMT2Q96KQ7 1210 aa19.14■□□□□ 0.66
HERC6-203ENST00000380265 FAM9AQ8IZU1 332 aaPredicted RBP19.06■□□□□ 0.64
HERC6-203ENST00000380265 CCDC180Q9P1Z9 1646 aa18.99■□□□□ 0.63
HERC6-203ENST00000380265 TRIM41Q8WV44 630 aa18.88■□□□□ 0.61
HERC6-203ENST00000380265 ACIN1Q9UKV3 1341 aaKnown RBP18.85■□□□□ 0.61
HERC6-203ENST00000380265 NEUROD1Q13562 356 aa18.84■□□□□ 0.61
HERC6-203ENST00000380265 GTF3C3Q9Y5Q9 886 aa18.81■□□□□ 0.6
HERC6-203ENST00000380265 MYT1Q01538 1121 aa18.8■□□□□ 0.6
HERC6-203ENST00000380265 CCER1Q8TC90 406 aaPredicted RBP18.79■□□□□ 0.6
HERC6-203ENST00000380265 CENPBP07199 599 aaPredicted RBP18.79■□□□□ 0.6
HERC6-203ENST00000380265 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.77■□□□□ 0.6
HERC6-203ENST00000380265 DIEXFQ68CQ4 756 aaKnown RBP18.66■□□□□ 0.58
HERC6-203ENST00000380265 TTBK1Q5TCY1 1321 aaPredicted RBP18.65■□□□□ 0.58
HERC6-203ENST00000380265 YTHDC1Q96MU7 727 aaKnown RBP18.59■□□□□ 0.57
HERC6-203ENST00000380265 RSF1Q96T23 1441 aaPredicted RBP18.28■□□□□ 0.52
HERC6-203ENST00000380265 ZNF316A6NFI3 1004 aaPredicted RBP18.26■□□□□ 0.51
HERC6-203ENST00000380265 ABCC9O60706 1549 aa18.16■□□□□ 0.5
HERC6-203ENST00000380265 RB1CC1Q8TDY2 1594 aa18.16■□□□□ 0.5
HERC6-203ENST00000380265 MIER1Q8N108 512 aa18.15■□□□□ 0.5
HERC6-203ENST00000380265 HNRNPUL2Q1KMD3 747 aaKnown RBP18.06■□□□□ 0.48
HERC6-203ENST00000380265 SCRIBQ14160 1630 aa18.06■□□□□ 0.48
HERC6-203ENST00000380265 UBTFP17480 764 aaKnown RBP18.03■□□□□ 0.48
HERC6-203ENST00000380265 CEP162Q5TB80 1403 aa17.86■□□□□ 0.45
HERC6-203ENST00000380265 RANGAP1P46060 587 aaPredicted RBP17.83■□□□□ 0.44
HERC6-203ENST00000380265 CECR2Q9BXF3 1484 aa17.82■□□□□ 0.44
HERC6-203ENST00000380265 SUPT16HQ9Y5B9 1047 aaKnown RBP17.81■□□□□ 0.44
HERC6-203ENST00000380265 APLP2Q06481 763 aa17.81■□□□□ 0.44
HERC6-203ENST00000380265 BCANQ96GW7 911 aa17.74■□□□□ 0.43
HERC6-203ENST00000380265 WRNQ14191 1432 aaPredicted RBP eCLIP17.74■□□□□ 0.43
HERC6-203ENST00000380265 ANP32EQ9BTT0 268 aa17.74■□□□□ 0.43
HERC6-203ENST00000380265 CSRNP3Q8WYN3 585 aa17.73■□□□□ 0.43
HERC6-203ENST00000380265 MROH2BQ7Z745 1585 aa17.72■□□□□ 0.43
HERC6-203ENST00000380265 TSHZ2Q9NRE2 1034 aa17.7■□□□□ 0.42
HERC6-203ENST00000380265 BCL11AQ9H165 835 aa17.68■□□□□ 0.42
HERC6-203ENST00000380265 TNIKQ9UKE5 1360 aa17.68■□□□□ 0.42
HERC6-203ENST00000380265 SOGA1O94964 1423 aa17.67■□□□□ 0.42
HERC6-203ENST00000380265 CCDC88BA6NC98 1476 aa17.67■□□□□ 0.42
HERC6-203ENST00000380265 CLSPNQ9HAW4 1339 aa17.65■□□□□ 0.42
HERC6-203ENST00000380265 ABCC8Q09428 1581 aa17.64■□□□□ 0.41
HERC6-203ENST00000380265 WIZO95785 1651 aa17.63■□□□□ 0.41
HERC6-203ENST00000380265 RUSC2Q8N2Y8 1516 aa17.52■□□□□ 0.4
HERC6-203ENST00000380265 FKBP8Q14318 412 aa17.52■□□□□ 0.4
HERC6-203ENST00000380265 NEFLP07196 543 aa17.49■□□□□ 0.39
HERC6-203ENST00000380265 GOLGA3Q08378 1498 aa17.48■□□□□ 0.39
HERC6-203ENST00000380265 ITGAEP38570 1179 aa17.47■□□□□ 0.39
HERC6-203ENST00000380265 KCNH8Q96L42 1107 aa17.46■□□□□ 0.39
HERC6-203ENST00000380265 CLIP1P30622 1438 aa17.44■□□□□ 0.38
HERC6-203ENST00000380265 EEA1Q15075 1411 aa17.42■□□□□ 0.38
HERC6-203ENST00000380265 BAZ1AQ9NRL2 1556 aaPredicted RBP17.39■□□□□ 0.37
HERC6-203ENST00000380265 ERICH6Q7L0X2 663 aa17.36■□□□□ 0.37
HERC6-203ENST00000380265 RBM19Q9Y4C8 960 aaKnown RBP17.35■□□□□ 0.37
HERC6-203ENST00000380265 DHX57Q6P158 1386 aaKnown RBP17.33■□□□□ 0.37
HERC6-203ENST00000380265 DDX10Q13206 875 aaKnown RBP17.33■□□□□ 0.37
HERC6-203ENST00000380265 VPS8Q8N3P4 1428 aa17.32■□□□□ 0.36
HERC6-203ENST00000380265 TRIM52Q96A61 297 aa17.31■□□□□ 0.36
HERC6-203ENST00000380265 EIF4G1Q04637 1599 aaKnown RBP17.3■□□□□ 0.36
HERC6-203ENST00000380265 CEP164Q9UPV0 1460 aa17.28■□□□□ 0.36
HERC6-203ENST00000380265 TOP2AP11388 1531 aaKnown RBP17.23■□□□□ 0.35
HERC6-203ENST00000380265 HIRIP3Q9BW71 556 aaPredicted RBP17.23■□□□□ 0.35
HERC6-203ENST00000380265 NACADO15069 1562 aa17.22■□□□□ 0.35
HERC6-203ENST00000380265 KANK4Q5T7N3 995 aaPredicted RBP17.21■□□□□ 0.35
HERC6-203ENST00000380265 SMARCA2P51531 1590 aa17.18■□□□□ 0.34
HERC6-203ENST00000380265 ANP32CO43423 234 aa17.15■□□□□ 0.34
HERC6-203ENST00000380265 IRX6P78412 446 aaPredicted RBP17.15■□□□□ 0.34
HERC6-203ENST00000380265 RAPGEF2Q9Y4G8 1499 aa17.14■□□□□ 0.33
HERC6-203ENST00000380265 CDK11AQ9UQ88 783 aaPredicted RBP17.12■□□□□ 0.33
HERC6-203ENST00000380265 SIN3AQ96ST3 1273 aa17.1■□□□□ 0.33
HERC6-203ENST00000380265 MSH5O43196 834 aa17.09■□□□□ 0.33
HERC6-203ENST00000380265 KIF21BO75037 1637 aa17.07■□□□□ 0.32
HERC6-203ENST00000380265 PABPN1Q86U42 306 aaKnown RBP eCLIP17.06■□□□□ 0.32
HERC6-203ENST00000380265 FAM50AQ14320 339 aaKnown RBP17.05■□□□□ 0.32
HERC6-203ENST00000380265 ATP1B4Q9UN42 357 aaPredicted RBP17.03■□□□□ 0.32
HERC6-203ENST00000380265 SMARCA4P51532 1647 aa17.03■□□□□ 0.32
HERC6-203ENST00000380265 CCNB3Q8WWL7 1395 aa17.02■□□□□ 0.32
HERC6-203ENST00000380265 HNRNPUQ00839 825 aaKnown RBP eCLIP17.02■□□□□ 0.32
HERC6-203ENST00000380265 RAB3GAP2Q9H2M9 1393 aa17■□□□□ 0.31
HERC6-203ENST00000380265 BAZ1BQ9UIG0 1483 aaKnown RBP16.99■□□□□ 0.31
HERC6-203ENST00000380265 SYNJ1O43426 1573 aa16.97■□□□□ 0.31
HERC6-203ENST00000380265 CCER2I3L3R5 266 aa16.94■□□□□ 0.3
HERC6-203ENST00000380265 PPP1R15AO75807 674 aaPredicted RBP16.94■□□□□ 0.3
HERC6-203ENST00000380265 NBR1Q14596 966 aa16.93■□□□□ 0.3
HERC6-203ENST00000380265 DEKP35659 375 aaKnown RBP16.92■□□□□ 0.3
HERC6-203ENST00000380265 PRKCSHP14314 528 aaPredicted RBP16.91■□□□□ 0.3
HERC6-203ENST00000380265 FANCIQ9NVI1 1328 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms