Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC14.26□□□□□ -0.13
LIMK1P53667 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC14.26□□□□□ -0.13
LIMK1P53667 RN7SL23P-201ENST00000484055 275 ntBASIC14.26□□□□□ -0.13
LIMK1P53667 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC14.26□□□□□ -0.13
LIMK1P53667 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC14.26□□□□□ -0.13
LIMK1P53667 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC14.26□□□□□ -0.13
LIMK1P53667 MIR2392-201ENST00000584881 84 ntBASIC14.26□□□□□ -0.13
LIMK1P53667 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC14.26□□□□□ -0.13
LIMK1P53667 RPS5-204ENST00000598098 536 ntTSL 2 BASIC14.26□□□□□ -0.13
LIMK1P53667 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
LIMK1P53667 AC007250.1-201ENST00000608934 338 ntBASIC14.26□□□□□ -0.13
LIMK1P53667 AC002044.2-201ENST00000624910 970 ntBASIC14.26□□□□□ -0.13
LIMK1P53667 AC127383.1-201ENST00000444697 1800 ntBASIC14.26□□□□□ -0.13
LIMK1P53667 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
LIMK1P53667 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.26□□□□□ -0.13
LIMK1P53667 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 AL672207.1-201ENST00000328462 1570 ntBASIC14.26□□□□□ -0.13
LIMK1P53667 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.26□□□□□ -0.13
LIMK1P53667 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.26□□□□□ -0.13
LIMK1P53667 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
LIMK1P53667 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.25□□□□□ -0.13
LIMK1P53667 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.25□□□□□ -0.13
LIMK1P53667 ZBED1P1-201ENST00000502364 1930 ntBASIC14.25□□□□□ -0.13
LIMK1P53667 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
LIMK1P53667 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.25□□□□□ -0.13
LIMK1P53667 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
LIMK1P53667 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 CTBP2P8-201ENST00000422584 1330 ntBASIC14.25□□□□□ -0.13
LIMK1P53667 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.25□□□□□ -0.13
LIMK1P53667 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC14.25□□□□□ -0.13
LIMK1P53667 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC14.25□□□□□ -0.13
LIMK1P53667 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC14.25□□□□□ -0.13
LIMK1P53667 BRI3P1-201ENST00000440440 378 ntBASIC14.25□□□□□ -0.13
LIMK1P53667 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC14.25□□□□□ -0.13
LIMK1P53667 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 RN7SL530P-201ENST00000485097 298 ntBASIC14.25□□□□□ -0.13
LIMK1P53667 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC14.25□□□□□ -0.13
LIMK1P53667 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC14.25□□□□□ -0.13
LIMK1P53667 AC007952.4-201ENST00000573866 637 ntBASIC14.25□□□□□ -0.13
LIMK1P53667 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
LIMK1P53667 AL139339.2-201ENST00000608063 657 ntBASIC14.25□□□□□ -0.13
LIMK1P53667 HMGB1P24-201ENST00000611897 328 ntBASIC14.25□□□□□ -0.13
LIMK1P53667 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
LIMK1P53667 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
LIMK1P53667 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
LIMK1P53667 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
LIMK1P53667 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
LIMK1P53667 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
LIMK1P53667 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
LIMK1P53667 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
LIMK1P53667 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
LIMK1P53667 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.25□□□□□ -0.13
LIMK1P53667 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
LIMK1P53667 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIMK1P53667 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIMK1P53667 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIMK1P53667 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIMK1P53667 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIMK1P53667 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
LIMK1P53667 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
LIMK1P53667 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
LIMK1P53667 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIMK1P53667 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.24□□□□□ -0.13
LIMK1P53667 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
LIMK1P53667 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIMK1P53667 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.24□□□□□ -0.13
LIMK1P53667 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LIMK1P53667 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIMK1P53667 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LIMK1P53667 HSPA7-201ENST00000445535 1927 ntBASIC14.24□□□□□ -0.13
LIMK1P53667 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms