Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AC138907.10-201ENST00000623708 983 ntBASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AL031595.1-201ENST00000623969 4709 ntBASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AL445523.1-201ENST00000451184 1362 ntBASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS9D1Q9Y2B5 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS9D1Q9Y2B5 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS9D1Q9Y2B5 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS9D1Q9Y2B5 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
VPS9D1Q9Y2B5 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS9D1Q9Y2B5 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.58□□□□□ -0.07
VPS9D1Q9Y2B5 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS9D1Q9Y2B5 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS9D1Q9Y2B5 AC087386.2-201ENST00000623212 4637 ntBASIC14.58□□□□□ -0.07
VPS9D1Q9Y2B5 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS9D1Q9Y2B5 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS9D1Q9Y2B5 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
VPS9D1Q9Y2B5 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 CICP4-201ENST00000447359 2812 ntBASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 PEG13-201ENST00000631594 5667 ntBASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 MIR1202-201ENST00000408529 83 ntBASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 AC010141.1-201ENST00000411585 623 ntBASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 RPL7P3-201ENST00000441388 714 ntBASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 AC012645.4-201ENST00000610691 1061 ntBASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 AC083899.2-201ENST00000423285 1376 ntBASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS9D1Q9Y2B5 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms