Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 Z69890.1-201ENST00000382990 339 ntBASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 RPL7P35-201ENST00000446943 740 ntBASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 AC079112.1-201ENST00000454972 939 ntBASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 SKA2-205ENST00000580541 689 ntTSL 3 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 AL022313.4-201ENST00000562756 2046 ntBASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PAAF1Q9BRP4 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 AC090505.1-201ENST00000430515 1834 ntBASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 HLA-DMA-203ENST00000395305 777 ntBASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 HIST2H2BA-201ENST00000412169 381 ntBASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 MIR4649-201ENST00000582839 64 ntBASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 AL021707.6-201ENST00000609212 491 ntBASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 AC087392.5-201ENST00000612517 489 ntBASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 AC073911.3-201ENST00000624401 631 ntBASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PAAF1Q9BRP4 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 BAX-205ENST00000391871 687 ntTSL 5 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PAAF1Q9BRP4 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms