Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 MIR33B-201ENST00000385104 96 ntBASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 FTLP1-201ENST00000449155 526 ntBASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 TMEM198B-204ENST00000484016 896 ntBASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 SIGLEC18P-201ENST00000602271 909 ntBASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 AC051619.9-201ENST00000623237 597 ntBASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 AL353726.2-201ENST00000623259 884 ntBASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 AC114947.1-202ENST00000514136 344 ntBASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 AC007326.1-201ENST00000604539 458 ntBASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 AC103691.2-201ENST00000618824 433 ntBASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC60Q8IWA6 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
CCDC60Q8IWA6 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC60Q8IWA6 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC60Q8IWA6 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC60Q8IWA6 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CCDC60Q8IWA6 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC60Q8IWA6 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC60Q8IWA6 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
CCDC60Q8IWA6 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC60Q8IWA6 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC16.01■□□□□ 0.15
CCDC60Q8IWA6 AC006480.2-201ENST00000609770 1337 ntBASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms