Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.75□□□□□ -0.21
SOX3P41225 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
SOX3P41225 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC13.74□□□□□ -0.21
SOX3P41225 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SOX3P41225 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.74□□□□□ -0.21
SOX3P41225 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.74□□□□□ -0.21
SOX3P41225 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
SOX3P41225 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SOX3P41225 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC13.74□□□□□ -0.21
SOX3P41225 TLE1P1-201ENST00000422965 589 ntBASIC13.74□□□□□ -0.21
SOX3P41225 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.74□□□□□ -0.21
SOX3P41225 AL591846.1-201ENST00000451736 433 ntBASIC13.74□□□□□ -0.21
SOX3P41225 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.74□□□□□ -0.21
SOX3P41225 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC13.74□□□□□ -0.21
SOX3P41225 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.74□□□□□ -0.21
SOX3P41225 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.74□□□□□ -0.21
SOX3P41225 DGCR9-201ENST00000609630 2415 ntBASIC13.74□□□□□ -0.21
SOX3P41225 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 C8orf49-201ENST00000525043 1968 ntBASIC13.74□□□□□ -0.21
SOX3P41225 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 AC087386.2-201ENST00000623212 4637 ntBASIC13.74□□□□□ -0.21
SOX3P41225 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SOX3P41225 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
SOX3P41225 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX3P41225 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
SOX3P41225 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
SOX3P41225 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.73□□□□□ -0.21
SOX3P41225 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
SOX3P41225 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX3P41225 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
SOX3P41225 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 AC099521.3-201ENST00000624251 2938 ntBASIC13.73□□□□□ -0.21
SOX3P41225 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
SOX3P41225 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX3P41225 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.73□□□□□ -0.21
SOX3P41225 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX3P41225 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.73□□□□□ -0.21
SOX3P41225 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.73□□□□□ -0.21
SOX3P41225 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.73□□□□□ -0.21
SOX3P41225 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 HSPB1P2-201ENST00000448722 546 ntBASIC13.73□□□□□ -0.21
SOX3P41225 AC104306.2-201ENST00000451877 341 ntBASIC13.73□□□□□ -0.21
SOX3P41225 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.73□□□□□ -0.21
SOX3P41225 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.73□□□□□ -0.21
SOX3P41225 AC100850.1-201ENST00000506768 649 ntBASIC13.73□□□□□ -0.21
SOX3P41225 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.73□□□□□ -0.21
SOX3P41225 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 AC104982.3-201ENST00000581995 514 ntBASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms