Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC15.27■□□□□ 0.04
BDNFP23560 AC116345.2-201ENST00000512837 523 ntBASIC15.27■□□□□ 0.04
BDNFP23560 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC15.27■□□□□ 0.04
BDNFP23560 AC134698.3-201ENST00000523880 214 ntBASIC15.27■□□□□ 0.04
BDNFP23560 CENPX-208ENST00000584347 799 ntTSL 2 BASIC15.27■□□□□ 0.04
BDNFP23560 AC012044.1-201ENST00000603431 297 ntBASIC15.27■□□□□ 0.04
BDNFP23560 AL591471.1-201ENST00000621855 229 ntBASIC15.27■□□□□ 0.04
BDNFP23560 AC079336.7-201ENST00000623428 1078 ntBASIC15.27■□□□□ 0.04
BDNFP23560 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
BDNFP23560 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC15.27■□□□□ 0.03
BDNFP23560 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
BDNFP23560 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BDNFP23560 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BDNFP23560 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.27■□□□□ 0.03
BDNFP23560 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.27■□□□□ 0.03
BDNFP23560 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.03
BDNFP23560 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BDNFP23560 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.27■□□□□ 0.03
BDNFP23560 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.27■□□□□ 0.03
BDNFP23560 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
BDNFP23560 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC15.27■□□□□ 0.03
BDNFP23560 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.27■□□□□ 0.03
BDNFP23560 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BDNFP23560 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BDNFP23560 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
BDNFP23560 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
BDNFP23560 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
BDNFP23560 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BDNFP23560 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
BDNFP23560 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BDNFP23560 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.27■□□□□ 0.03
BDNFP23560 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
BDNFP23560 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
BDNFP23560 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.26■□□□□ 0.03
BDNFP23560 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC15.26■□□□□ 0.03
BDNFP23560 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
BDNFP23560 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC15.26■□□□□ 0.03
BDNFP23560 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 AC064801.2-201ENST00000625052 1303 ntBASIC15.26■□□□□ 0.03
BDNFP23560 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 FAM45BP-202ENST00000592932 1624 ntBASIC15.26■□□□□ 0.03
BDNFP23560 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.26■□□□□ 0.03
BDNFP23560 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
BDNFP23560 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 AC007274.2-201ENST00000421675 662 ntBASIC15.26■□□□□ 0.03
BDNFP23560 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC15.26■□□□□ 0.03
BDNFP23560 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.26■□□□□ 0.03
BDNFP23560 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC15.26■□□□□ 0.03
BDNFP23560 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC15.26■□□□□ 0.03
BDNFP23560 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC15.26■□□□□ 0.03
BDNFP23560 AL109837.1-201ENST00000603272 613 ntBASIC15.26■□□□□ 0.03
BDNFP23560 MIR6769A-201ENST00000617340 73 ntBASIC15.26■□□□□ 0.03
BDNFP23560 CDK7-214ENST00000626796 358 ntTSL 5 BASIC15.26■□□□□ 0.03
BDNFP23560 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC15.26■□□□□ 0.03
BDNFP23560 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 OR2I1P-210ENST00000642037 4691 ntBASIC15.26■□□□□ 0.03
BDNFP23560 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.26■□□□□ 0.03
BDNFP23560 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.26■□□□□ 0.03
BDNFP23560 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 LAP3P2-201ENST00000454686 1454 ntBASIC15.26■□□□□ 0.03
BDNFP23560 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
BDNFP23560 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
BDNFP23560 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BDNFP23560 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC15.26■□□□□ 0.03
BDNFP23560 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
BDNFP23560 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC15.25■□□□□ 0.03
BDNFP23560 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.25■□□□□ 0.03
BDNFP23560 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.25■□□□□ 0.03
BDNFP23560 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
BDNFP23560 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.25■□□□□ 0.03
BDNFP23560 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
BDNFP23560 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.25■□□□□ 0.03
BDNFP23560 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 ELK2AP-201ENST00000392510 1007 ntBASIC15.25■□□□□ 0.03
BDNFP23560 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC15.25■□□□□ 0.03
BDNFP23560 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms