Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC14.86□□□□□ -0.03
HMGA1P17096 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC14.86□□□□□ -0.03
HMGA1P17096 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC14.86□□□□□ -0.03
HMGA1P17096 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC14.86□□□□□ -0.03
HMGA1P17096 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC14.86□□□□□ -0.03
HMGA1P17096 CHCHD2P2-201ENST00000503744 321 ntBASIC14.86□□□□□ -0.03
HMGA1P17096 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC14.86□□□□□ -0.03
HMGA1P17096 RNA5SP417-201ENST00000516459 108 ntBASIC14.86□□□□□ -0.03
HMGA1P17096 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC14.86□□□□□ -0.03
HMGA1P17096 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC14.86□□□□□ -0.03
HMGA1P17096 NUDT4P2-201ENST00000578341 546 ntBASIC14.86□□□□□ -0.03
HMGA1P17096 RN7SL455P-201ENST00000580629 282 ntBASIC14.86□□□□□ -0.03
HMGA1P17096 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC14.86□□□□□ -0.03
HMGA1P17096 GMFG-209ENST00000600322 622 ntTSL 5 BASIC14.86□□□□□ -0.03
HMGA1P17096 AC007250.1-201ENST00000608934 338 ntBASIC14.86□□□□□ -0.03
HMGA1P17096 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 AP001065.2-201ENST00000617205 644 ntBASIC14.86□□□□□ -0.03
HMGA1P17096 AL161773.1-201ENST00000624845 863 ntBASIC14.86□□□□□ -0.03
HMGA1P17096 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC14.86□□□□□ -0.03
HMGA1P17096 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HMGA1P17096 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HMGA1P17096 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.86□□□□□ -0.03
HMGA1P17096 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HMGA1P17096 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HMGA1P17096 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.85□□□□□ -0.03
HMGA1P17096 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
HMGA1P17096 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
HMGA1P17096 IL9RP3-201ENST00000442856 1674 ntBASIC14.85□□□□□ -0.03
HMGA1P17096 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.85□□□□□ -0.03
HMGA1P17096 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 PYY2-201ENST00000315776 282 ntBASIC14.85□□□□□ -0.03
HMGA1P17096 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
HMGA1P17096 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
HMGA1P17096 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC14.85□□□□□ -0.03
HMGA1P17096 AC098934.1-203ENST00000442868 1262 ntBASIC14.85□□□□□ -0.03
HMGA1P17096 LYPLA2P1-203ENST00000447689 696 ntBASIC14.85□□□□□ -0.03
HMGA1P17096 SCARNA12-201ENST00000459155 270 ntBASIC14.85□□□□□ -0.03
HMGA1P17096 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC14.85□□□□□ -0.03
HMGA1P17096 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC14.85□□□□□ -0.03
HMGA1P17096 KLF17P1-201ENST00000547105 1126 ntBASIC14.85□□□□□ -0.03
HMGA1P17096 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC14.85□□□□□ -0.03
HMGA1P17096 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC14.85□□□□□ -0.03
HMGA1P17096 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC14.85□□□□□ -0.03
HMGA1P17096 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC14.85□□□□□ -0.03
HMGA1P17096 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
HMGA1P17096 RN7SL470P-201ENST00000583069 259 ntBASIC14.85□□□□□ -0.03
HMGA1P17096 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.85□□□□□ -0.03
HMGA1P17096 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC14.85□□□□□ -0.03
HMGA1P17096 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HMGA1P17096 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC14.85□□□□□ -0.03
HMGA1P17096 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.85□□□□□ -0.03
HMGA1P17096 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HMGA1P17096 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC14.85□□□□□ -0.03
HMGA1P17096 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.85□□□□□ -0.03
HMGA1P17096 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC14.85□□□□□ -0.03
HMGA1P17096 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.85□□□□□ -0.03
HMGA1P17096 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HMGA1P17096 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC14.84□□□□□ -0.03
HMGA1P17096 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HMGA1P17096 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms