Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
VRK3Q8IV63 EXOG-217ENST00000630638 197 ntTSL 5 BASIC22.27■■□□□ 1.16
VRK3Q8IV63 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.27■■□□□ 1.16
VRK3Q8IV63 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
VRK3Q8IV63 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
VRK3Q8IV63 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
VRK3Q8IV63 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
VRK3Q8IV63 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
VRK3Q8IV63 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VRK3Q8IV63 KRT16P3-201ENST00000439127 1283 ntBASIC22.26■■□□□ 1.15
VRK3Q8IV63 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC22.26■■□□□ 1.15
VRK3Q8IV63 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC22.26■■□□□ 1.15
VRK3Q8IV63 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VRK3Q8IV63 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC22.25■■□□□ 1.15
VRK3Q8IV63 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC22.25■■□□□ 1.15
VRK3Q8IV63 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC22.25■■□□□ 1.15
VRK3Q8IV63 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
VRK3Q8IV63 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VRK3Q8IV63 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
VRK3Q8IV63 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
VRK3Q8IV63 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC22.24■■□□□ 1.15
VRK3Q8IV63 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC22.24■■□□□ 1.15
VRK3Q8IV63 GRAMD4P7-201ENST00000578182 1232 ntBASIC22.24■■□□□ 1.15
VRK3Q8IV63 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC22.24■■□□□ 1.15
VRK3Q8IV63 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.24■■□□□ 1.15
VRK3Q8IV63 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
VRK3Q8IV63 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC22.24■■□□□ 1.15
VRK3Q8IV63 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
VRK3Q8IV63 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.24■■□□□ 1.15
VRK3Q8IV63 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
VRK3Q8IV63 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
VRK3Q8IV63 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC22.23■■□□□ 1.15
VRK3Q8IV63 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC22.23■■□□□ 1.15
VRK3Q8IV63 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.23■■□□□ 1.15
VRK3Q8IV63 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
VRK3Q8IV63 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
VRK3Q8IV63 AC005703.6-201ENST00000623265 1329 ntBASIC22.23■■□□□ 1.15
VRK3Q8IV63 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
VRK3Q8IV63 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
VRK3Q8IV63 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
VRK3Q8IV63 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
VRK3Q8IV63 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
VRK3Q8IV63 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
VRK3Q8IV63 AL356441.2-201ENST00000443009 864 ntBASIC22.22■■□□□ 1.15
VRK3Q8IV63 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC22.22■■□□□ 1.15
VRK3Q8IV63 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
VRK3Q8IV63 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VRK3Q8IV63 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
VRK3Q8IV63 TFPT-201ENST00000391757 774 ntTSL 5 BASIC22.21■■□□□ 1.15
VRK3Q8IV63 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
VRK3Q8IV63 MIR6724-1-201ENST00000616420 92 ntBASIC22.21■■□□□ 1.15
VRK3Q8IV63 MIR6724-2-201ENST00000616483 92 ntBASIC22.21■■□□□ 1.15
VRK3Q8IV63 MIR6724-4-201ENST00000617390 92 ntBASIC22.21■■□□□ 1.15
VRK3Q8IV63 MIR6724-3-201ENST00000622482 92 ntBASIC22.21■■□□□ 1.15
VRK3Q8IV63 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VRK3Q8IV63 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
VRK3Q8IV63 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
VRK3Q8IV63 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
VRK3Q8IV63 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
VRK3Q8IV63 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
VRK3Q8IV63 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VRK3Q8IV63 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
VRK3Q8IV63 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.15
VRK3Q8IV63 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
VRK3Q8IV63 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.15
VRK3Q8IV63 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
VRK3Q8IV63 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
VRK3Q8IV63 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
VRK3Q8IV63 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC22.2■■□□□ 1.14
VRK3Q8IV63 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
VRK3Q8IV63 H19-210ENST00000439725 1929 ntTSL 2 BASIC22.19■■□□□ 1.14
VRK3Q8IV63 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
VRK3Q8IV63 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
VRK3Q8IV63 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
VRK3Q8IV63 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
VRK3Q8IV63 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
VRK3Q8IV63 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
VRK3Q8IV63 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
VRK3Q8IV63 CASK-201ENST00000378154 2494 ntTSL 5 BASIC22.18■■□□□ 1.14
VRK3Q8IV63 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.18■■□□□ 1.14
VRK3Q8IV63 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
VRK3Q8IV63 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
VRK3Q8IV63 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
VRK3Q8IV63 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC22.18■■□□□ 1.14
VRK3Q8IV63 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
VRK3Q8IV63 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
VRK3Q8IV63 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
VRK3Q8IV63 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
VRK3Q8IV63 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.17■■□□□ 1.14
VRK3Q8IV63 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
VRK3Q8IV63 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC22.17■■□□□ 1.14
VRK3Q8IV63 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
VRK3Q8IV63 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.17■■□□□ 1.14
VRK3Q8IV63 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
VRK3Q8IV63 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
VRK3Q8IV63 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
VRK3Q8IV63 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
VRK3Q8IV63 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC22.17■■□□□ 1.14
VRK3Q8IV63 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC22.17■■□□□ 1.14
VRK3Q8IV63 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms