Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
KRT40Q6A162 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.3■■□□□ 1.8
KRT40Q6A162 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
KRT40Q6A162 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
KRT40Q6A162 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC26.3■■□□□ 1.8
KRT40Q6A162 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
KRT40Q6A162 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC26.29■■□□□ 1.8
KRT40Q6A162 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
KRT40Q6A162 SNX5-217ENST00000606557 1087 ntBASIC26.29■■□□□ 1.8
KRT40Q6A162 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
KRT40Q6A162 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
KRT40Q6A162 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
KRT40Q6A162 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
KRT40Q6A162 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
KRT40Q6A162 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC26.28■■□□□ 1.8
KRT40Q6A162 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
KRT40Q6A162 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
KRT40Q6A162 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC26.28■■□□□ 1.8
KRT40Q6A162 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC26.28■■□□□ 1.8
KRT40Q6A162 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
KRT40Q6A162 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
KRT40Q6A162 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.27■■□□□ 1.8
KRT40Q6A162 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.27■■□□□ 1.8
KRT40Q6A162 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
KRT40Q6A162 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.27■■□□□ 1.8
KRT40Q6A162 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.27■■□□□ 1.8
KRT40Q6A162 AC021242.3-201ENST00000607598 1377 ntBASIC26.27■■□□□ 1.8
KRT40Q6A162 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
KRT40Q6A162 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
KRT40Q6A162 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
KRT40Q6A162 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
KRT40Q6A162 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC26.27■■□□□ 1.8
KRT40Q6A162 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
KRT40Q6A162 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
KRT40Q6A162 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
KRT40Q6A162 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC26.26■■□□□ 1.79
KRT40Q6A162 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
KRT40Q6A162 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
KRT40Q6A162 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC26.26■■□□□ 1.79
KRT40Q6A162 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
KRT40Q6A162 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.26■■□□□ 1.79
KRT40Q6A162 UNC93B8-201ENST00000511903 705 ntBASIC26.26■■□□□ 1.79
KRT40Q6A162 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.26■■□□□ 1.79
KRT40Q6A162 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
KRT40Q6A162 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
KRT40Q6A162 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
KRT40Q6A162 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
KRT40Q6A162 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC26.25■■□□□ 1.79
KRT40Q6A162 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.24■■□□□ 1.79
KRT40Q6A162 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
KRT40Q6A162 DUSP8P5-201ENST00000422884 1815 ntBASIC26.24■■□□□ 1.79
KRT40Q6A162 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
KRT40Q6A162 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
KRT40Q6A162 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.24■■□□□ 1.79
KRT40Q6A162 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.24■■□□□ 1.79
KRT40Q6A162 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.24■■□□□ 1.79
KRT40Q6A162 MIR4787-201ENST00000607364 84 ntBASIC26.24■■□□□ 1.79
KRT40Q6A162 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC26.24■■□□□ 1.79
KRT40Q6A162 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.24■■□□□ 1.79
KRT40Q6A162 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC26.24■■□□□ 1.79
KRT40Q6A162 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
KRT40Q6A162 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC26.23■■□□□ 1.79
KRT40Q6A162 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
KRT40Q6A162 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
KRT40Q6A162 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
KRT40Q6A162 BX664725.1-201ENST00000438252 379 ntBASIC26.23■■□□□ 1.79
KRT40Q6A162 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.23■■□□□ 1.79
KRT40Q6A162 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.23■■□□□ 1.79
KRT40Q6A162 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
KRT40Q6A162 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
KRT40Q6A162 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
KRT40Q6A162 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC26.23■■□□□ 1.79
KRT40Q6A162 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
KRT40Q6A162 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
KRT40Q6A162 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
KRT40Q6A162 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
KRT40Q6A162 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
KRT40Q6A162 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
KRT40Q6A162 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
KRT40Q6A162 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.22■■□□□ 1.79
KRT40Q6A162 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
KRT40Q6A162 ANOS2P-203ENST00000472227 1816 ntBASIC26.22■■□□□ 1.79
KRT40Q6A162 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
KRT40Q6A162 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
KRT40Q6A162 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
KRT40Q6A162 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
KRT40Q6A162 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC26.21■■□□□ 1.79
KRT40Q6A162 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.21■■□□□ 1.79
KRT40Q6A162 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
KRT40Q6A162 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC26.2■■□□□ 1.79
KRT40Q6A162 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
KRT40Q6A162 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
KRT40Q6A162 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
KRT40Q6A162 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
KRT40Q6A162 NFE2L3P1-201ENST00000588207 1959 ntBASIC26.2■■□□□ 1.78
KRT40Q6A162 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
KRT40Q6A162 H19-210ENST00000439725 1929 ntTSL 2 BASIC26.2■■□□□ 1.78
KRT40Q6A162 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
KRT40Q6A162 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
KRT40Q6A162 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms