Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 RAP2CP1-202ENST00000605179 643 ntBASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM3Q53GG5 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM3Q53GG5 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PDLIM3Q53GG5 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.64■□□□□ 0.57
PDLIM3Q53GG5 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM3Q53GG5 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.64■□□□□ 0.57
PDLIM3Q53GG5 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
PDLIM3Q53GG5 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM3Q53GG5 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM3Q53GG5 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM3Q53GG5 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.63■□□□□ 0.57
PDLIM3Q53GG5 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM3Q53GG5 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM3Q53GG5 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM3Q53GG5 LONRF2P2-201ENST00000439212 571 ntBASIC18.63■□□□□ 0.57
PDLIM3Q53GG5 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.63■□□□□ 0.57
PDLIM3Q53GG5 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PDLIM3Q53GG5 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM3Q53GG5 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 KRT16P3-201ENST00000439127 1283 ntBASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 MTX2-204ENST00000443241 799 ntTSL 3 BASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 KRT125P-201ENST00000546827 989 ntBASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PDLIM3Q53GG5 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM3Q53GG5 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM3Q53GG5 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
PDLIM3Q53GG5 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM3Q53GG5 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM3Q53GG5 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC18.6■□□□□ 0.57
PDLIM3Q53GG5 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM3Q53GG5 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM3Q53GG5 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM3Q53GG5 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM3Q53GG5 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM3Q53GG5 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
PDLIM3Q53GG5 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 MIR4787-201ENST00000607364 84 ntBASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM3Q53GG5 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM3Q53GG5 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
PDLIM3Q53GG5 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM3Q53GG5 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms