Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RNF4P78317 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF4P78317 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
RNF4P78317 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
RNF4P78317 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
RNF4P78317 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
RNF4P78317 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.03■□□□□ 0.96
RNF4P78317 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.03■□□□□ 0.96
RNF4P78317 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RNF4P78317 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RNF4P78317 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RNF4P78317 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RNF4P78317 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.03■□□□□ 0.96
RNF4P78317 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RNF4P78317 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF4P78317 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF4P78317 AL136116.3-201ENST00000402907 1138 ntBASIC21.02■□□□□ 0.96
RNF4P78317 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.02■□□□□ 0.96
RNF4P78317 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF4P78317 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF4P78317 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RNF4P78317 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RNF4P78317 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
RNF4P78317 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.01■□□□□ 0.95
RNF4P78317 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.01■□□□□ 0.95
RNF4P78317 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21■□□□□ 0.95
RNF4P78317 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
RNF4P78317 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF4P78317 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21■□□□□ 0.95
RNF4P78317 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21■□□□□ 0.95
RNF4P78317 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RNF4P78317 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
RNF4P78317 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21■□□□□ 0.95
RNF4P78317 AC009102.2-201ENST00000606772 1639 ntBASIC21■□□□□ 0.95
RNF4P78317 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.99■□□□□ 0.95
RNF4P78317 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RNF4P78317 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
RNF4P78317 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.99■□□□□ 0.95
RNF4P78317 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF4P78317 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RNF4P78317 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
RNF4P78317 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.98■□□□□ 0.95
RNF4P78317 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF4P78317 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
RNF4P78317 ABCB10P4-201ENST00000566803 2184 ntBASIC20.98■□□□□ 0.95
RNF4P78317 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF4P78317 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RNF4P78317 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RNF4P78317 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.98■□□□□ 0.95
RNF4P78317 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF4P78317 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF4P78317 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF4P78317 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RNF4P78317 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.98■□□□□ 0.95
RNF4P78317 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF4P78317 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF4P78317 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.97■□□□□ 0.95
RNF4P78317 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RNF4P78317 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF4P78317 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.97■□□□□ 0.95
RNF4P78317 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RNF4P78317 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.97■□□□□ 0.95
RNF4P78317 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF4P78317 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF4P78317 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
RNF4P78317 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.96■□□□□ 0.95
RNF4P78317 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.96■□□□□ 0.95
RNF4P78317 SRD5A1P1-201ENST00000442297 786 ntBASIC20.96■□□□□ 0.95
RNF4P78317 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
RNF4P78317 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.96■□□□□ 0.95
RNF4P78317 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
RNF4P78317 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF4P78317 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RNF4P78317 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF4P78317 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RNF4P78317 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
RNF4P78317 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RNF4P78317 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF4P78317 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.95■□□□□ 0.94
RNF4P78317 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF4P78317 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.95■□□□□ 0.94
RNF4P78317 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RNF4P78317 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF4P78317 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RNF4P78317 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RNF4P78317 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RNF4P78317 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.94■□□□□ 0.94
RNF4P78317 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RNF4P78317 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF4P78317 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.93■□□□□ 0.94
RNF4P78317 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RNF4P78317 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF4P78317 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF4P78317 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF4P78317 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
RNF4P78317 C17orf82-201ENST00000623772 1530 ntBASIC20.93■□□□□ 0.94
RNF4P78317 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RNF4P78317 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF4P78317 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF4P78317 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms