Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CIITAP33076 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CIITAP33076 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
CIITAP33076 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CIITAP33076 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CIITAP33076 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
CIITAP33076 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CIITAP33076 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CIITAP33076 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
CIITAP33076 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CIITAP33076 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CIITAP33076 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.7■■□□□ 1.7
CIITAP33076 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CIITAP33076 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CIITAP33076 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC25.69■■□□□ 1.7
CIITAP33076 PEMT-206ENST00000435340 960 ntTSL 5 BASIC25.69■■□□□ 1.7
CIITAP33076 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CIITAP33076 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CIITAP33076 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CIITAP33076 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC25.68■■□□□ 1.7
CIITAP33076 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CIITAP33076 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.68■■□□□ 1.7
CIITAP33076 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC25.68■■□□□ 1.7
CIITAP33076 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CIITAP33076 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CIITAP33076 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CIITAP33076 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CIITAP33076 AL136116.3-201ENST00000402907 1138 ntBASIC25.67■■□□□ 1.7
CIITAP33076 GATM-206ENST00000558336 1522 ntTSL 2 BASIC25.67■■□□□ 1.7
CIITAP33076 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC25.67■■□□□ 1.7
CIITAP33076 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC25.67■■□□□ 1.7
CIITAP33076 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CIITAP33076 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CIITAP33076 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC25.66■■□□□ 1.7
CIITAP33076 ABCB10P4-201ENST00000566803 2184 ntBASIC25.66■■□□□ 1.7
CIITAP33076 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
CIITAP33076 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CIITAP33076 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CIITAP33076 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CIITAP33076 C17orf82-201ENST00000623772 1530 ntBASIC25.65■■□□□ 1.7
CIITAP33076 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
CIITAP33076 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
CIITAP33076 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
CIITAP33076 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.65■■□□□ 1.7
CIITAP33076 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CIITAP33076 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.7
CIITAP33076 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
CIITAP33076 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CIITAP33076 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC25.64■■□□□ 1.7
CIITAP33076 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
CIITAP33076 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.69
CIITAP33076 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CIITAP33076 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
CIITAP33076 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CIITAP33076 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CIITAP33076 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
CIITAP33076 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CIITAP33076 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CIITAP33076 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.62■■□□□ 1.69
CIITAP33076 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CIITAP33076 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC25.62■■□□□ 1.69
CIITAP33076 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CIITAP33076 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CIITAP33076 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
CIITAP33076 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC25.61■■□□□ 1.69
CIITAP33076 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.61■■□□□ 1.69
CIITAP33076 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
CIITAP33076 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CIITAP33076 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
CIITAP33076 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
CIITAP33076 AC093323.1-202ENST00000635031 2045 ntBASIC25.6■■□□□ 1.69
CIITAP33076 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
CIITAP33076 SRD5A1P1-201ENST00000442297 786 ntBASIC25.6■■□□□ 1.69
CIITAP33076 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.6■■□□□ 1.69
CIITAP33076 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CIITAP33076 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.6■■□□□ 1.69
CIITAP33076 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CIITAP33076 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
CIITAP33076 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CIITAP33076 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CIITAP33076 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CIITAP33076 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.59■■□□□ 1.69
CIITAP33076 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC25.59■■□□□ 1.69
CIITAP33076 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
CIITAP33076 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CIITAP33076 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
CIITAP33076 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CIITAP33076 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CIITAP33076 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.58■■□□□ 1.69
CIITAP33076 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CIITAP33076 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CIITAP33076 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC25.58■■□□□ 1.69
CIITAP33076 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
CIITAP33076 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CIITAP33076 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CIITAP33076 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC25.58■■□□□ 1.69
CIITAP33076 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
CIITAP33076 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CIITAP33076 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC25.57■■□□□ 1.68
CIITAP33076 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.57■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms