Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DMBP28068 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC17.22■□□□□ 0.35
HLA-DMBP28068 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC17.22■□□□□ 0.35
HLA-DMBP28068 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
HLA-DMBP28068 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HLA-DMBP28068 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
HLA-DMBP28068 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.22■□□□□ 0.35
HLA-DMBP28068 KRT8P33-201ENST00000508125 1423 ntBASIC17.21■□□□□ 0.35
HLA-DMBP28068 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HLA-DMBP28068 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DMBP28068 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DMBP28068 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DMBP28068 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.21■□□□□ 0.35
HLA-DMBP28068 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC17.21■□□□□ 0.35
HLA-DMBP28068 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC17.21■□□□□ 0.35
HLA-DMBP28068 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DMBP28068 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DMBP28068 H19-210ENST00000439725 1929 ntTSL 2 BASIC17.21■□□□□ 0.35
HLA-DMBP28068 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.21■□□□□ 0.35
HLA-DMBP28068 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
HLA-DMBP28068 AL161729.1-201ENST00000604104 1402 ntBASIC17.21■□□□□ 0.34
HLA-DMBP28068 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
HLA-DMBP28068 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HLA-DMBP28068 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DMBP28068 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DMBP28068 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DMBP28068 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DMBP28068 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DMBP28068 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DMBP28068 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DMBP28068 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HLA-DMBP28068 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DMBP28068 AC011551.1-201ENST00000614101 683 ntBASIC17.2■□□□□ 0.34
HLA-DMBP28068 GAK-223ENST00000628912 497 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DMBP28068 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DMBP28068 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DMBP28068 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DMBP28068 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
HLA-DMBP28068 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HLA-DMBP28068 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
HLA-DMBP28068 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HLA-DMBP28068 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DMBP28068 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DMBP28068 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DMBP28068 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DMBP28068 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DMBP28068 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DMBP28068 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DMBP28068 BEX3-202ENST00000372634 753 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DMBP28068 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DMBP28068 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DMBP28068 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC17.19■□□□□ 0.34
HLA-DMBP28068 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC17.19■□□□□ 0.34
HLA-DMBP28068 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DMBP28068 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DMBP28068 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DMBP28068 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DMBP28068 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DMBP28068 EI24-204ENST00000527235 1625 ntTSL 5 BASIC17.18■□□□□ 0.34
HLA-DMBP28068 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
HLA-DMBP28068 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DMBP28068 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DMBP28068 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
HLA-DMBP28068 YBX1P4-201ENST00000392794 808 ntBASIC17.18■□□□□ 0.34
HLA-DMBP28068 PVT1_1.1-201ENST00000615125 194 ntBASIC17.18■□□□□ 0.34
HLA-DMBP28068 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC17.18■□□□□ 0.34
HLA-DMBP28068 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DMBP28068 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC17.18■□□□□ 0.34
HLA-DMBP28068 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DMBP28068 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC17.17■□□□□ 0.34
HLA-DMBP28068 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DMBP28068 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
HLA-DMBP28068 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC17.17■□□□□ 0.34
HLA-DMBP28068 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC17.17■□□□□ 0.34
HLA-DMBP28068 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DMBP28068 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC17.17■□□□□ 0.34
HLA-DMBP28068 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC17.17■□□□□ 0.34
HLA-DMBP28068 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DMBP28068 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
HLA-DMBP28068 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DMBP28068 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DMBP28068 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DMBP28068 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DMBP28068 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DMBP28068 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DMBP28068 AC092068.2-201ENST00000590491 1708 ntBASIC17.16■□□□□ 0.34
HLA-DMBP28068 DUSP8P3-201ENST00000399571 1760 ntBASIC17.16■□□□□ 0.34
HLA-DMBP28068 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
HLA-DMBP28068 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DMBP28068 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DMBP28068 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HLA-DMBP28068 MTX2-204ENST00000443241 799 ntTSL 3 BASIC17.16■□□□□ 0.34
HLA-DMBP28068 AC120024.1-201ENST00000562672 995 ntBASIC17.16■□□□□ 0.34
HLA-DMBP28068 AC019171.1-201ENST00000601251 1056 ntBASIC17.16■□□□□ 0.34
HLA-DMBP28068 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DMBP28068 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
HLA-DMBP28068 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
HLA-DMBP28068 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
HLA-DMBP28068 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DMBP28068 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms