Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC25.63■■□□□ 1.69
MSH4O15457 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
MSH4O15457 AC009102.2-201ENST00000606772 1639 ntBASIC25.63■■□□□ 1.69
MSH4O15457 PEMT-206ENST00000435340 960 ntTSL 5 BASIC25.63■■□□□ 1.69
MSH4O15457 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
MSH4O15457 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
MSH4O15457 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
MSH4O15457 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
MSH4O15457 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
MSH4O15457 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
MSH4O15457 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
MSH4O15457 AL136116.3-201ENST00000402907 1138 ntBASIC25.62■■□□□ 1.69
MSH4O15457 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.62■■□□□ 1.69
MSH4O15457 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
MSH4O15457 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC25.62■■□□□ 1.69
MSH4O15457 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
MSH4O15457 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH4O15457 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH4O15457 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC25.61■■□□□ 1.69
MSH4O15457 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
MSH4O15457 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC25.61■■□□□ 1.69
MSH4O15457 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
MSH4O15457 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH4O15457 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC25.61■■□□□ 1.69
MSH4O15457 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH4O15457 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH4O15457 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH4O15457 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC25.6■■□□□ 1.69
MSH4O15457 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH4O15457 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MSH4O15457 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
MSH4O15457 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC25.59■■□□□ 1.69
MSH4O15457 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
MSH4O15457 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
MSH4O15457 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC25.58■■□□□ 1.69
MSH4O15457 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
MSH4O15457 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC25.58■■□□□ 1.69
MSH4O15457 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.58■■□□□ 1.69
MSH4O15457 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
MSH4O15457 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
MSH4O15457 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
MSH4O15457 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC25.58■■□□□ 1.68
MSH4O15457 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC25.57■■□□□ 1.68
MSH4O15457 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
MSH4O15457 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
MSH4O15457 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
MSH4O15457 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
MSH4O15457 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
MSH4O15457 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
MSH4O15457 AC093323.1-202ENST00000635031 2045 ntBASIC25.56■■□□□ 1.68
MSH4O15457 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.68
MSH4O15457 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
MSH4O15457 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
MSH4O15457 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
MSH4O15457 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
MSH4O15457 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
MSH4O15457 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.55■■□□□ 1.68
MSH4O15457 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
MSH4O15457 GATM-206ENST00000558336 1522 ntTSL 2 BASIC25.55■■□□□ 1.68
MSH4O15457 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
MSH4O15457 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
MSH4O15457 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.54■■□□□ 1.68
MSH4O15457 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
MSH4O15457 C17orf82-201ENST00000623772 1530 ntBASIC25.54■■□□□ 1.68
MSH4O15457 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
MSH4O15457 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC25.54■■□□□ 1.68
MSH4O15457 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
MSH4O15457 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
MSH4O15457 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
MSH4O15457 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
MSH4O15457 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
MSH4O15457 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.53■■□□□ 1.68
MSH4O15457 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
MSH4O15457 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC25.53■■□□□ 1.68
MSH4O15457 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
MSH4O15457 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH4O15457 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH4O15457 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH4O15457 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH4O15457 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC25.52■■□□□ 1.68
MSH4O15457 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH4O15457 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
MSH4O15457 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.68
MSH4O15457 SRD5A1P1-201ENST00000442297 786 ntBASIC25.51■■□□□ 1.67
MSH4O15457 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
MSH4O15457 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.51■■□□□ 1.67
MSH4O15457 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
MSH4O15457 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC25.51■■□□□ 1.67
MSH4O15457 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC25.5■■□□□ 1.67
MSH4O15457 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC25.5■■□□□ 1.67
MSH4O15457 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
MSH4O15457 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC25.5■■□□□ 1.67
MSH4O15457 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
MSH4O15457 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.5■■□□□ 1.67
MSH4O15457 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.5■■□□□ 1.67
MSH4O15457 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
MSH4O15457 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
MSH4O15457 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC25.5■■□□□ 1.67
MSH4O15457 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC25.5■■□□□ 1.67
MSH4O15457 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.5■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms