Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV5A0A0B4J249 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV5A0A0B4J249 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV5A0A0B4J249 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 GUSBP5-202ENST00000510805 1989 ntBASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV5A0A0B4J249 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV5A0A0B4J249 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 AL161729.1-201ENST00000604104 1402 ntBASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 LINC00526-201ENST00000581067 1875 ntBASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV5A0A0B4J249 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 AL592295.1-201ENST00000400984 884 ntBASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 SPCS2P3-201ENST00000500401 656 ntBASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 AC018755.3-202ENST00000596210 929 ntBASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.55■□□□□ 0.4
TRAV5A0A0B4J249 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV5A0A0B4J249 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV5A0A0B4J249 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV5A0A0B4J249 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV5A0A0B4J249 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV5A0A0B4J249 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV5A0A0B4J249 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV5A0A0B4J249 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
TRAV5A0A0B4J249 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV5A0A0B4J249 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV5A0A0B4J249 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
TRAV5A0A0B4J249 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAV5A0A0B4J249 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV5A0A0B4J249 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TRAV5A0A0B4J249 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TRAV5A0A0B4J249 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAV5A0A0B4J249 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC17.53■□□□□ 0.4
TRAV5A0A0B4J249 SSSCA1-AS1-201ENST00000567594 614 ntBASIC17.53■□□□□ 0.4
TRAV5A0A0B4J249 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV5A0A0B4J249 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV5A0A0B4J249 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV5A0A0B4J249 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV5A0A0B4J249 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
TRAV5A0A0B4J249 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV5A0A0B4J249 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV5A0A0B4J249 AL022069.1-201ENST00000568025 1636 ntBASIC17.52■□□□□ 0.4
TRAV5A0A0B4J249 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAV5A0A0B4J249 AL592293.1-201ENST00000502889 1188 ntBASIC17.52■□□□□ 0.4
TRAV5A0A0B4J249 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV5A0A0B4J249 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAV5A0A0B4J249 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms