Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.54■□□□□ 0.24
SCN4AP35499 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.54■□□□□ 0.24
SCN4AP35499 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC16.54■□□□□ 0.24
SCN4AP35499 CICP6-201ENST00000457191 2729 ntBASIC16.54■□□□□ 0.24
SCN4AP35499 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC16.54■□□□□ 0.24
SCN4AP35499 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
SCN4AP35499 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
SCN4AP35499 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SCN4AP35499 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 RBP4-203ENST00000371469 814 ntTSL 5 BASIC16.54■□□□□ 0.24
SCN4AP35499 CCL19-202ENST00000378800 414 ntTSL 2 BASIC16.54■□□□□ 0.24
SCN4AP35499 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC16.54■□□□□ 0.24
SCN4AP35499 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC16.54■□□□□ 0.24
SCN4AP35499 RFNG-202ENST00000429557 994 ntTSL 5 BASIC16.54■□□□□ 0.24
SCN4AP35499 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC16.54■□□□□ 0.24
SCN4AP35499 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC16.54■□□□□ 0.24
SCN4AP35499 AC112220.4-201ENST00000604982 1263 ntBASIC16.54■□□□□ 0.24
SCN4AP35499 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC16.54■□□□□ 0.24
SCN4AP35499 AC008622.3-201ENST00000621170 600 ntBASIC16.54■□□□□ 0.24
SCN4AP35499 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
SCN4AP35499 AC215219.1-201ENST00000400706 1817 ntBASIC16.54■□□□□ 0.24
SCN4AP35499 POLL-206ENST00000370172 2308 ntTSL 2 BASIC16.54■□□□□ 0.24
SCN4AP35499 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SCN4AP35499 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.53■□□□□ 0.24
SCN4AP35499 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
SCN4AP35499 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
SCN4AP35499 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.53■□□□□ 0.24
SCN4AP35499 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.53■□□□□ 0.24
SCN4AP35499 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.53■□□□□ 0.24
SCN4AP35499 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.53■□□□□ 0.24
SCN4AP35499 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC16.53■□□□□ 0.24
SCN4AP35499 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC16.53■□□□□ 0.24
SCN4AP35499 HMGA1P1-201ENST00000415560 1062 ntBASIC16.53■□□□□ 0.24
SCN4AP35499 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC16.53■□□□□ 0.24
SCN4AP35499 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC16.53■□□□□ 0.24
SCN4AP35499 UGT1A12P-201ENST00000447084 853 ntBASIC16.53■□□□□ 0.24
SCN4AP35499 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC16.53■□□□□ 0.24
SCN4AP35499 BOLA3P2-201ENST00000586496 323 ntBASIC16.53■□□□□ 0.24
SCN4AP35499 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC16.53■□□□□ 0.24
SCN4AP35499 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 BCL2-203ENST00000589955 5011 ntBASIC16.53■□□□□ 0.24
SCN4AP35499 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.53■□□□□ 0.24
SCN4AP35499 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SCN4AP35499 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 AC068760.1-201ENST00000493579 1953 ntBASIC16.53■□□□□ 0.24
SCN4AP35499 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SCN4AP35499 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SCN4AP35499 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC16.52■□□□□ 0.24
SCN4AP35499 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SCN4AP35499 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SCN4AP35499 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SCN4AP35499 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SCN4AP35499 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC16.52■□□□□ 0.24
SCN4AP35499 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC16.52■□□□□ 0.24
SCN4AP35499 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC16.52■□□□□ 0.24
SCN4AP35499 AC021321.1-201ENST00000607397 1113 ntBASIC16.52■□□□□ 0.24
SCN4AP35499 SNX20-205ENST00000610485 557 ntTSL 5 BASIC16.52■□□□□ 0.24
SCN4AP35499 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC16.52■□□□□ 0.24
SCN4AP35499 GARS-210ENST00000627489 324 ntTSL 4 BASIC16.52■□□□□ 0.24
SCN4AP35499 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SCN4AP35499 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SCN4AP35499 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.52■□□□□ 0.24
SCN4AP35499 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SCN4AP35499 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.52■□□□□ 0.23
SCN4AP35499 AC018442.1-201ENST00000421439 2061 ntBASIC16.52■□□□□ 0.23
SCN4AP35499 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.52■□□□□ 0.23
SCN4AP35499 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SCN4AP35499 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC16.52■□□□□ 0.23
SCN4AP35499 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
SCN4AP35499 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SCN4AP35499 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SCN4AP35499 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SCN4AP35499 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
SCN4AP35499 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SCN4AP35499 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SCN4AP35499 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
SCN4AP35499 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC16.52■□□□□ 0.23
SCN4AP35499 AC005722.1-201ENST00000431878 964 ntBASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms