Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
SMARCA1P28370 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SMARCA1P28370 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SMARCA1P28370 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
SMARCA1P28370 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 AC090643.2-201ENST00000623442 2029 ntBASIC16.53■□□□□ 0.24
SMARCA1P28370 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SMARCA1P28370 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 BAX-205ENST00000391871 687 ntTSL 5 BASIC16.53■□□□□ 0.24
SMARCA1P28370 AC026320.2-201ENST00000434379 478 ntBASIC16.53■□□□□ 0.24
SMARCA1P28370 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.53■□□□□ 0.24
SMARCA1P28370 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.53■□□□□ 0.24
SMARCA1P28370 IGHJ2P-201ENST00000454480 60 ntBASIC16.53■□□□□ 0.24
SMARCA1P28370 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC16.53■□□□□ 0.24
SMARCA1P28370 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.53■□□□□ 0.24
SMARCA1P28370 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC16.53■□□□□ 0.24
SMARCA1P28370 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC16.53■□□□□ 0.24
SMARCA1P28370 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.53■□□□□ 0.24
SMARCA1P28370 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.53■□□□□ 0.24
SMARCA1P28370 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC16.53■□□□□ 0.24
SMARCA1P28370 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC16.53■□□□□ 0.24
SMARCA1P28370 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SMARCA1P28370 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC16.53■□□□□ 0.24
SMARCA1P28370 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.53■□□□□ 0.24
SMARCA1P28370 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SMARCA1P28370 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SMARCA1P28370 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SMARCA1P28370 USP39-220ENST00000613444 2161 ntTSL 2 BASIC16.53■□□□□ 0.24
SMARCA1P28370 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
SMARCA1P28370 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SMARCA1P28370 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
SMARCA1P28370 LINC00115-201ENST00000473798 1317 ntBASIC16.52■□□□□ 0.24
SMARCA1P28370 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
SMARCA1P28370 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SMARCA1P28370 AC027601.5-201ENST00000624065 2482 ntBASIC16.52■□□□□ 0.24
SMARCA1P28370 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
SMARCA1P28370 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC16.52■□□□□ 0.24
SMARCA1P28370 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
SMARCA1P28370 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.52■□□□□ 0.24
SMARCA1P28370 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC16.52■□□□□ 0.24
SMARCA1P28370 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.52■□□□□ 0.24
SMARCA1P28370 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.52■□□□□ 0.24
SMARCA1P28370 GOLGA2P8-201ENST00000505201 779 ntBASIC16.52■□□□□ 0.24
SMARCA1P28370 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SMARCA1P28370 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
SMARCA1P28370 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC16.52■□□□□ 0.24
SMARCA1P28370 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 NAT9-220ENST00000582870 896 ntTSL 5 BASIC16.52■□□□□ 0.24
SMARCA1P28370 CENPX-208ENST00000584347 799 ntTSL 2 BASIC16.52■□□□□ 0.24
SMARCA1P28370 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SMARCA1P28370 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SMARCA1P28370 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
SMARCA1P28370 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
SMARCA1P28370 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC16.52■□□□□ 0.23
SMARCA1P28370 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
SMARCA1P28370 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SMARCA1P28370 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SMARCA1P28370 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SMARCA1P28370 FAM90A2P-201ENST00000511144 1395 ntBASIC16.51■□□□□ 0.23
SMARCA1P28370 FAM90A25P-201ENST00000528404 1395 ntBASIC16.51■□□□□ 0.23
SMARCA1P28370 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.51■□□□□ 0.23
SMARCA1P28370 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
SMARCA1P28370 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 AL590824.1-201ENST00000403828 1349 ntBASIC16.51■□□□□ 0.23
SMARCA1P28370 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms