Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
HMGB3O15347 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC11.75□□□□□ -0.53
HMGB3O15347 GRM4-202ENST00000374181 7275 ntTSL 5 BASIC11.75□□□□□ -0.53
HMGB3O15347 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC11.75□□□□□ -0.53
HMGB3O15347 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
HMGB3O15347 SEMA6D-204ENST00000358066 5913 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 TECPR2-201ENST00000359520 8686 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
HMGB3O15347 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
HMGB3O15347 MTND6P24-201ENST00000440466 518 ntBASIC11.75□□□□□ -0.53
HMGB3O15347 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC11.75□□□□□ -0.53
HMGB3O15347 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC11.75□□□□□ -0.53
HMGB3O15347 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC11.75□□□□□ -0.53
HMGB3O15347 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC11.75□□□□□ -0.53
HMGB3O15347 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC11.75□□□□□ -0.53
HMGB3O15347 AC092902.6-201ENST00000641783 218 ntBASIC11.75□□□□□ -0.53
HMGB3O15347 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC11.75□□□□□ -0.53
HMGB3O15347 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC11.75□□□□□ -0.53
HMGB3O15347 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC11.75□□□□□ -0.53
HMGB3O15347 ZCCHC9-201ENST00000254037 4606 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 PLEC-201ENST00000322810 15249 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 AC005014.1-201ENST00000432006 2976 ntBASIC11.75□□□□□ -0.53
HMGB3O15347 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 AL121723.1-201ENST00000445194 1519 ntBASIC11.75□□□□□ -0.53
HMGB3O15347 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 ZNF592-201ENST00000299927 7863 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 NFE2L1-202ENST00000361665 4729 ntTSL 5 BASIC11.75□□□□□ -0.53
HMGB3O15347 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
HMGB3O15347 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 C2-206ENST00000442278 2434 ntTSL 2 BASIC11.75□□□□□ -0.53
HMGB3O15347 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HMGB3O15347 PERP-201ENST00000421351 4290 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 CETP-203ENST00000566128 1733 ntTSL 5 BASIC11.74□□□□□ -0.53
HMGB3O15347 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
HMGB3O15347 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC11.74□□□□□ -0.53
HMGB3O15347 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC11.74□□□□□ -0.53
HMGB3O15347 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC11.74□□□□□ -0.53
HMGB3O15347 IKZF4-201ENST00000262032 5229 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
HMGB3O15347 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC11.74□□□□□ -0.53
HMGB3O15347 GPR37L1-201ENST00000367282 6588 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 TMF1-201ENST00000398559 6849 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
HMGB3O15347 RPS19-201ENST00000221975 500 ntTSL 3 BASIC11.74□□□□□ -0.53
HMGB3O15347 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 SPDYE17-201ENST00000412399 783 ntBASIC11.74□□□□□ -0.53
HMGB3O15347 ADH5P3-201ENST00000433842 1137 ntBASIC11.74□□□□□ -0.53
HMGB3O15347 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC11.74□□□□□ -0.53
HMGB3O15347 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC11.74□□□□□ -0.53
HMGB3O15347 RNA5SP419-201ENST00000515908 135 ntBASIC11.74□□□□□ -0.53
HMGB3O15347 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC11.74□□□□□ -0.53
HMGB3O15347 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC11.74□□□□□ -0.53
HMGB3O15347 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
HMGB3O15347 KRT8P23-201ENST00000560090 1207 ntBASIC11.74□□□□□ -0.53
HMGB3O15347 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC11.74□□□□□ -0.53
HMGB3O15347 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
HMGB3O15347 AC003101.2-201ENST00000612557 442 ntBASIC11.74□□□□□ -0.53
HMGB3O15347 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC11.74□□□□□ -0.53
HMGB3O15347 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 FLNB-202ENST00000358537 9391 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC11.74□□□□□ -0.53
HMGB3O15347 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms