Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 AC026316.1-201ENST00000398900 414 ntBASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 LY6E-208ENST00000520531 490 ntTSL 2 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 AC016397.2-201ENST00000624848 1985 ntBASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 AC215219.1-201ENST00000400706 1817 ntBASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC17.57■□□□□ 0.4
RPAP1Q9BWH6 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 NOC2LP1-201ENST00000450578 752 ntBASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 RN7SL181P-201ENST00000462921 277 ntBASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 IQSEC3P1-201ENST00000538799 536 ntBASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 AC015688.4-201ENST00000580780 1647 ntBASIC17.56■□□□□ 0.4
RPAP1Q9BWH6 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 RN7SL258P-201ENST00000478664 300 ntBASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 MIR6074-201ENST00000612054 107 ntBASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 AP003419.4-201ENST00000616071 517 ntBASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RPAP1Q9BWH6 GOLGA8VP-201ENST00000559009 1798 ntBASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms