Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.18□□□□□ -0.14
PKP4Q99569 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
PKP4Q99569 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.18□□□□□ -0.14
PKP4Q99569 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.18□□□□□ -0.14
PKP4Q99569 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
PKP4Q99569 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.18□□□□□ -0.14
PKP4Q99569 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PKP4Q99569 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
PKP4Q99569 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.17□□□□□ -0.14
PKP4Q99569 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 AC064801.2-201ENST00000625052 1303 ntBASIC14.17□□□□□ -0.14
PKP4Q99569 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
PKP4Q99569 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.17□□□□□ -0.14
PKP4Q99569 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
PKP4Q99569 CICP4-201ENST00000447359 2812 ntBASIC14.17□□□□□ -0.14
PKP4Q99569 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.17□□□□□ -0.14
PKP4Q99569 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.17□□□□□ -0.14
PKP4Q99569 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.17□□□□□ -0.14
PKP4Q99569 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 MIR663B-201ENST00000408361 115 ntBASIC14.17□□□□□ -0.14
PKP4Q99569 HNRNPA1P63-201ENST00000427917 963 ntBASIC14.17□□□□□ -0.14
PKP4Q99569 FAM58BP-201ENST00000439056 645 ntBASIC14.17□□□□□ -0.14
PKP4Q99569 AC012441.2-201ENST00000444843 739 ntBASIC14.17□□□□□ -0.14
PKP4Q99569 AL591846.1-201ENST00000451736 433 ntBASIC14.17□□□□□ -0.14
PKP4Q99569 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 CD74-212ENST00000524315 584 ntTSL 5 BASIC14.17□□□□□ -0.14
PKP4Q99569 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC14.17□□□□□ -0.14
PKP4Q99569 RBM8B-201ENST00000555532 525 ntBASIC14.17□□□□□ -0.14
PKP4Q99569 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC14.17□□□□□ -0.14
PKP4Q99569 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC14.17□□□□□ -0.14
PKP4Q99569 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC14.17□□□□□ -0.14
PKP4Q99569 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC14.17□□□□□ -0.14
PKP4Q99569 AL033527.4-201ENST00000641026 673 ntBASIC14.17□□□□□ -0.14
PKP4Q99569 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.17□□□□□ -0.14
PKP4Q99569 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.17□□□□□ -0.14
PKP4Q99569 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.17□□□□□ -0.14
PKP4Q99569 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
PKP4Q99569 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
PKP4Q99569 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
PKP4Q99569 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
PKP4Q99569 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.17□□□□□ -0.14
PKP4Q99569 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
PKP4Q99569 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PKP4Q99569 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
PKP4Q99569 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.17□□□□□ -0.14
PKP4Q99569 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PKP4Q99569 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PKP4Q99569 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PKP4Q99569 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.16□□□□□ -0.14
PKP4Q99569 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.16□□□□□ -0.14
PKP4Q99569 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PKP4Q99569 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
PKP4Q99569 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.16□□□□□ -0.14
PKP4Q99569 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PKP4Q99569 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PKP4Q99569 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PKP4Q99569 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PKP4Q99569 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PKP4Q99569 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
PKP4Q99569 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PKP4Q99569 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PKP4Q99569 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC14.16□□□□□ -0.14
PKP4Q99569 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC14.16□□□□□ -0.14
PKP4Q99569 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PKP4Q99569 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC14.16□□□□□ -0.14
PKP4Q99569 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC14.16□□□□□ -0.14
PKP4Q99569 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC14.16□□□□□ -0.14
PKP4Q99569 RNMTL1P1-201ENST00000454103 560 ntBASIC14.16□□□□□ -0.14
PKP4Q99569 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC14.16□□□□□ -0.14
PKP4Q99569 AC021723.1-201ENST00000486306 515 ntBASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms