Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 SSR4-202ENST00000370085 526 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 AL450346.2-201ENST00000495602 1024 ntBASIC13.92□□□□□ -0.18
VPS13AQ96RL7 RNA5SP420-201ENST00000516997 137 ntBASIC13.92□□□□□ -0.18
VPS13AQ96RL7 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 CDC37P2-201ENST00000562287 1029 ntBASIC13.92□□□□□ -0.18
VPS13AQ96RL7 RN7SL480P-201ENST00000581481 294 ntBASIC13.92□□□□□ -0.18
VPS13AQ96RL7 AC022966.2-201ENST00000587434 367 ntBASIC13.92□□□□□ -0.18
VPS13AQ96RL7 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 RBFOX1-214ENST00000552089 1430 ntTSL 5 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 RHOC-205ENST00000369636 786 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 GRPEL2P1-201ENST00000453145 339 ntBASIC13.92□□□□□ -0.18
VPS13AQ96RL7 AC007679.1-201ENST00000458609 502 ntBASIC13.92□□□□□ -0.18
VPS13AQ96RL7 AC008021.1-201ENST00000474180 414 ntBASIC13.92□□□□□ -0.18
VPS13AQ96RL7 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
VPS13AQ96RL7 MIR339-201ENST00000362153 94 ntBASIC13.91□□□□□ -0.18
VPS13AQ96RL7 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 SNRPCP15-201ENST00000424055 192 ntBASIC13.91□□□□□ -0.18
VPS13AQ96RL7 AC092573.1-201ENST00000433054 884 ntBASIC13.91□□□□□ -0.18
VPS13AQ96RL7 OR52V1P-201ENST00000515557 898 ntBASIC13.91□□□□□ -0.18
VPS13AQ96RL7 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 SKA2-205ENST00000580541 689 ntTSL 3 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 AL590556.2-202ENST00000636906 844 ntBASIC13.91□□□□□ -0.18
VPS13AQ96RL7 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 AC138035.3-201ENST00000622706 2791 ntBASIC13.91□□□□□ -0.18
VPS13AQ96RL7 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 AC007881.1-201ENST00000437460 187 ntBASIC13.91□□□□□ -0.18
VPS13AQ96RL7 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 RN7SL605P-201ENST00000577229 281 ntBASIC13.91□□□□□ -0.18
VPS13AQ96RL7 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 FTH1P18-201ENST00000412071 549 ntBASIC13.91□□□□□ -0.18
VPS13AQ96RL7 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 PRR20FP-201ENST00000603320 180 ntBASIC13.91□□□□□ -0.18
VPS13AQ96RL7 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms