Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLIP3Q96DZ5 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 INE2-201ENST00000630399 1874 ntBASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 AL354877.1-201ENST00000424412 413 ntBASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 FNTAP2-201ENST00000430308 634 ntBASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 CALR4P-201ENST00000431943 946 ntBASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 EIF4HP1-201ENST00000453115 687 ntBASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 AKR7A2P1-201ENST00000460134 915 ntBASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 KC6-205ENST00000599934 556 ntTSL 4 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 AL451050.2-201ENST00000606967 682 ntBASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 AC138696.2-201ENST00000607376 223 ntBASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 AC018735.1-201ENST00000437208 1502 ntBASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 SLC8A3-205ENST00000394330 2622 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 AC138028.6-201ENST00000616106 1482 ntBASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLIP3Q96DZ5 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 AC005730.2-201ENST00000564549 1184 ntBASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 MROH4P-201ENST00000431302 1578 ntBASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CLIP3Q96DZ5 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms