Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB4Q8WW32 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
HMGB4Q8WW32 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
HMGB4Q8WW32 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB4Q8WW32 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 AL627389.1-201ENST00000413508 1182 ntBASIC14.55□□□□□ -0.08
HMGB4Q8WW32 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 ST13P19-201ENST00000442505 1124 ntBASIC14.55□□□□□ -0.08
HMGB4Q8WW32 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 AP001184.1-201ENST00000637936 376 ntBASIC14.55□□□□□ -0.08
HMGB4Q8WW32 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 AC126177.1-201ENST00000547829 2218 ntBASIC14.55□□□□□ -0.08
HMGB4Q8WW32 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 PPT1-215ENST00000641471 2368 ntBASIC14.55□□□□□ -0.08
HMGB4Q8WW32 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 AP002353.1-201ENST00000528257 1599 ntBASIC14.55□□□□□ -0.08
HMGB4Q8WW32 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB4Q8WW32 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 AC073869.2-201ENST00000417338 1026 ntBASIC14.54□□□□□ -0.08
HMGB4Q8WW32 AC097065.1-201ENST00000425737 517 ntBASIC14.54□□□□□ -0.08
HMGB4Q8WW32 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 AC138701.2-201ENST00000553634 226 ntBASIC14.54□□□□□ -0.08
HMGB4Q8WW32 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 KRT8P1-201ENST00000557533 1207 ntBASIC14.54□□□□□ -0.08
HMGB4Q8WW32 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
HMGB4Q8WW32 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms