Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AC006987.1-201ENST00000413610 527 ntBASIC11.82□□□□□ -0.52
LMO4P61968 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC11.82□□□□□ -0.52
LMO4P61968 GUSBP10-201ENST00000417412 665 ntBASIC11.82□□□□□ -0.52
LMO4P61968 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC11.82□□□□□ -0.52
LMO4P61968 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC11.82□□□□□ -0.52
LMO4P61968 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC11.82□□□□□ -0.52
LMO4P61968 ERP29P1-201ENST00000442902 706 ntBASIC11.82□□□□□ -0.52
LMO4P61968 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC11.82□□□□□ -0.52
LMO4P61968 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC11.82□□□□□ -0.52
LMO4P61968 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC11.82□□□□□ -0.52
LMO4P61968 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC11.82□□□□□ -0.52
LMO4P61968 TMCO5B-205ENST00000530020 894 ntBASIC11.82□□□□□ -0.52
LMO4P61968 AP000911.2-201ENST00000534330 502 ntBASIC11.82□□□□□ -0.52
LMO4P61968 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
LMO4P61968 NUDT4P2-201ENST00000578341 546 ntBASIC11.82□□□□□ -0.52
LMO4P61968 MIR3180-2-201ENST00000581748 88 ntBASIC11.82□□□□□ -0.52
LMO4P61968 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC11.82□□□□□ -0.52
LMO4P61968 AL133467.4-201ENST00000602953 725 ntBASIC11.82□□□□□ -0.52
LMO4P61968 AC107464.3-201ENST00000609172 737 ntBASIC11.82□□□□□ -0.52
LMO4P61968 AP001065.2-201ENST00000617205 644 ntBASIC11.82□□□□□ -0.52
LMO4P61968 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC11.82□□□□□ -0.52
LMO4P61968 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 RER1-203ENST00000378513 3000 ntTSL 3 BASIC11.82□□□□□ -0.52
LMO4P61968 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 AC067931.2-201ENST00000623655 2003 ntBASIC11.82□□□□□ -0.52
LMO4P61968 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
LMO4P61968 LINC00115-201ENST00000473798 1317 ntBASIC11.82□□□□□ -0.52
LMO4P61968 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 RN7SL832P-201ENST00000607781 1756 ntBASIC11.82□□□□□ -0.52
LMO4P61968 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC11.82□□□□□ -0.52
LMO4P61968 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC11.82□□□□□ -0.52
LMO4P61968 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC11.82□□□□□ -0.52
LMO4P61968 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
LMO4P61968 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC11.81□□□□□ -0.52
LMO4P61968 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
LMO4P61968 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
LMO4P61968 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 AC006372.4-201ENST00000624122 1543 ntBASIC11.81□□□□□ -0.52
LMO4P61968 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
LMO4P61968 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 AL591122.2-201ENST00000624125 1853 ntBASIC11.81□□□□□ -0.52
LMO4P61968 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
LMO4P61968 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
LMO4P61968 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC11.81□□□□□ -0.52
LMO4P61968 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC11.81□□□□□ -0.52
LMO4P61968 AL354861.1-201ENST00000445213 355 ntBASIC11.81□□□□□ -0.52
LMO4P61968 AC018638.5-201ENST00000450885 754 ntBASIC11.81□□□□□ -0.52
LMO4P61968 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC11.81□□□□□ -0.52
LMO4P61968 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC11.81□□□□□ -0.52
LMO4P61968 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC11.81□□□□□ -0.52
LMO4P61968 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC11.81□□□□□ -0.52
LMO4P61968 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC11.81□□□□□ -0.52
LMO4P61968 MBP-227ENST00000526111 581 ntTSL 4 BASIC11.81□□□□□ -0.52
LMO4P61968 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 HERC2P11-201ENST00000562845 725 ntBASIC11.81□□□□□ -0.52
LMO4P61968 AC100756.2-201ENST00000569537 736 ntBASIC11.81□□□□□ -0.52
LMO4P61968 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC11.81□□□□□ -0.52
LMO4P61968 SIGLEC22P-201ENST00000599104 714 ntBASIC11.81□□□□□ -0.52
LMO4P61968 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC11.81□□□□□ -0.52
LMO4P61968 AL021707.6-201ENST00000609212 491 ntBASIC11.81□□□□□ -0.52
LMO4P61968 NID2-208ENST00000617139 3827 ntTSL 5 BASIC11.81□□□□□ -0.52
LMO4P61968 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 MIR6858-201ENST00000620733 67 ntBASIC11.81□□□□□ -0.52
LMO4P61968 AC009145.4-201ENST00000625119 1294 ntBASIC11.81□□□□□ -0.52
LMO4P61968 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LMO4P61968 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
LMO4P61968 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms