Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC16.96■□□□□ 0.31
BRCA1P38398 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BRCA1P38398 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC16.96■□□□□ 0.31
BRCA1P38398 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
BRCA1P38398 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC16.96■□□□□ 0.31
BRCA1P38398 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC16.96■□□□□ 0.31
BRCA1P38398 RPL29P2-202ENST00000498671 657 ntBASIC16.96■□□□□ 0.31
BRCA1P38398 AP006248.1-201ENST00000610471 67 ntBASIC16.96■□□□□ 0.31
BRCA1P38398 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC16.96■□□□□ 0.31
BRCA1P38398 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.96■□□□□ 0.31
BRCA1P38398 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BRCA1P38398 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC16.96■□□□□ 0.31
BRCA1P38398 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
BRCA1P38398 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
BRCA1P38398 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
BRCA1P38398 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
BRCA1P38398 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
BRCA1P38398 PTN-202ENST00000393083 1599 ntTSL 5 BASIC16.95■□□□□ 0.3
BRCA1P38398 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.95■□□□□ 0.3
BRCA1P38398 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BRCA1P38398 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.95■□□□□ 0.3
BRCA1P38398 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
BRCA1P38398 USP17L6P-201ENST00000382470 1197 ntBASIC16.95■□□□□ 0.3
BRCA1P38398 CA5BP1-205ENST00000435806 1064 ntBASIC16.95■□□□□ 0.3
BRCA1P38398 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC16.95■□□□□ 0.3
BRCA1P38398 AC022447.6-201ENST00000515522 438 ntBASIC16.95■□□□□ 0.3
BRCA1P38398 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC16.95■□□□□ 0.3
BRCA1P38398 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC16.95■□□□□ 0.3
BRCA1P38398 COG6-212ENST00000630730 186 ntTSL 5 BASIC16.95■□□□□ 0.3
BRCA1P38398 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
BRCA1P38398 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BRCA1P38398 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
BRCA1P38398 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.95■□□□□ 0.3
BRCA1P38398 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BRCA1P38398 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BRCA1P38398 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
BRCA1P38398 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BRCA1P38398 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.95■□□□□ 0.3
BRCA1P38398 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC16.95■□□□□ 0.3
BRCA1P38398 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
BRCA1P38398 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
BRCA1P38398 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC16.95■□□□□ 0.3
BRCA1P38398 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.95■□□□□ 0.3
BRCA1P38398 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BRCA1P38398 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BRCA1P38398 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BRCA1P38398 AC041040.1-201ENST00000425197 460 ntBASIC16.95■□□□□ 0.3
BRCA1P38398 SAP18P2-201ENST00000434334 459 ntBASIC16.95■□□□□ 0.3
BRCA1P38398 KRT18P15-201ENST00000458108 1291 ntBASIC16.95■□□□□ 0.3
BRCA1P38398 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
BRCA1P38398 AC104117.4-201ENST00000521486 847 ntBASIC16.95■□□□□ 0.3
BRCA1P38398 RPL10P8-201ENST00000522888 313 ntBASIC16.95■□□□□ 0.3
BRCA1P38398 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC16.95■□□□□ 0.3
BRCA1P38398 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC16.95■□□□□ 0.3
BRCA1P38398 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC16.95■□□□□ 0.3
BRCA1P38398 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BRCA1P38398 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC16.95■□□□□ 0.3
BRCA1P38398 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.94■□□□□ 0.3
BRCA1P38398 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
BRCA1P38398 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 AC011498.7-201ENST00000624986 2027 ntBASIC16.94■□□□□ 0.3
BRCA1P38398 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC16.94■□□□□ 0.3
BRCA1P38398 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.94■□□□□ 0.3
BRCA1P38398 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC16.94■□□□□ 0.3
BRCA1P38398 RN7SL838P-201ENST00000481676 295 ntBASIC16.94■□□□□ 0.3
BRCA1P38398 MST1L-204ENST00000545160 559 ntTSL 4 BASIC16.94■□□□□ 0.3
BRCA1P38398 PHBP18-201ENST00000546648 813 ntBASIC16.94■□□□□ 0.3
BRCA1P38398 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC16.94■□□□□ 0.3
BRCA1P38398 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC16.94■□□□□ 0.3
BRCA1P38398 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 AC112220.4-201ENST00000604982 1263 ntBASIC16.94■□□□□ 0.3
BRCA1P38398 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC16.94■□□□□ 0.3
BRCA1P38398 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
BRCA1P38398 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BRCA1P38398 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
BRCA1P38398 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 GUCY2EP-203ENST00000531117 1918 ntBASIC16.93■□□□□ 0.3
BRCA1P38398 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC16.93■□□□□ 0.3
BRCA1P38398 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
BRCA1P38398 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
BRCA1P38398 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC16.93■□□□□ 0.3
BRCA1P38398 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms