Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 AC234782.1-201ENST00000451950 919 ntBASIC12.41□□□□□ -0.42
USF1P22415 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
USF1P22415 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
USF1P22415 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC12.41□□□□□ -0.42
USF1P22415 AC008805.1-201ENST00000590892 364 ntBASIC12.41□□□□□ -0.42
USF1P22415 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC12.41□□□□□ -0.42
USF1P22415 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC12.41□□□□□ -0.42
USF1P22415 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC12.41□□□□□ -0.42
USF1P22415 SPCS2P2-201ENST00000603270 608 ntBASIC12.41□□□□□ -0.42
USF1P22415 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC12.41□□□□□ -0.42
USF1P22415 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC12.41□□□□□ -0.42
USF1P22415 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
USF1P22415 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 REXO1L4P-201ENST00000605109 1937 ntBASIC12.41□□□□□ -0.42
USF1P22415 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC12.4□□□□□ -0.42
USF1P22415 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
USF1P22415 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
USF1P22415 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
USF1P22415 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
USF1P22415 INE2-201ENST00000630399 1874 ntBASIC12.4□□□□□ -0.42
USF1P22415 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
USF1P22415 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
USF1P22415 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC12.4□□□□□ -0.42
USF1P22415 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 PCDHGB8P-201ENST00000502926 1973 ntBASIC12.4□□□□□ -0.42
USF1P22415 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
USF1P22415 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
USF1P22415 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
USF1P22415 CMC1-204ENST00000423894 549 ntTSL 2 BASIC12.4□□□□□ -0.42
USF1P22415 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC12.4□□□□□ -0.42
USF1P22415 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC12.4□□□□□ -0.42
USF1P22415 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC12.4□□□□□ -0.42
USF1P22415 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC12.4□□□□□ -0.42
USF1P22415 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC12.4□□□□□ -0.42
USF1P22415 SNORD3B-2-202ENST00000571722 791 ntBASIC12.4□□□□□ -0.42
USF1P22415 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 AC009884.2-201ENST00000603110 324 ntBASIC12.4□□□□□ -0.42
USF1P22415 AL132994.2-201ENST00000603120 687 ntBASIC12.4□□□□□ -0.42
USF1P22415 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC12.4□□□□□ -0.42
USF1P22415 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC12.4□□□□□ -0.42
USF1P22415 AL353770.1-201ENST00000614915 403 ntBASIC12.4□□□□□ -0.42
USF1P22415 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC12.4□□□□□ -0.42
USF1P22415 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 REXO1L2P-201ENST00000425429 2069 ntBASIC12.4□□□□□ -0.42
USF1P22415 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
USF1P22415 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
USF1P22415 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC12.4□□□□□ -0.42
USF1P22415 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC12.4□□□□□ -0.42
USF1P22415 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
USF1P22415 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC12.4□□□□□ -0.42
USF1P22415 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
USF1P22415 AC020910.5-201ENST00000623668 1865 ntBASIC12.4□□□□□ -0.42
USF1P22415 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
USF1P22415 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
USF1P22415 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
USF1P22415 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
USF1P22415 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
USF1P22415 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
USF1P22415 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.43
USF1P22415 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms