Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH6P52701 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH6P52701 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC19.72■□□□□ 0.75
MSH6P52701 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH6P52701 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH6P52701 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
MSH6P52701 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
MSH6P52701 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC19.72■□□□□ 0.75
MSH6P52701 DKKL1P1-201ENST00000400550 698 ntBASIC19.72■□□□□ 0.75
MSH6P52701 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH6P52701 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 LINP1-201ENST00000417112 917 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH6P52701 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH6P52701 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC19.72■□□□□ 0.75
MSH6P52701 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH6P52701 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC19.72■□□□□ 0.75
MSH6P52701 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC19.72■□□□□ 0.75
MSH6P52701 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC19.72■□□□□ 0.75
MSH6P52701 BMF-206ENST00000558774 671 ntTSL 3 BASIC19.72■□□□□ 0.75
MSH6P52701 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC19.72■□□□□ 0.75
MSH6P52701 CSTP2-201ENST00000610599 398 ntBASIC19.72■□□□□ 0.75
MSH6P52701 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH6P52701 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
MSH6P52701 MBP-202ENST00000355994 2772 ntTSL 5 BASIC19.72■□□□□ 0.75
MSH6P52701 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
MSH6P52701 AC117503.4-201ENST00000623229 1418 ntBASIC19.72■□□□□ 0.75
MSH6P52701 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
MSH6P52701 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH6P52701 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
MSH6P52701 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC19.72■□□□□ 0.75
MSH6P52701 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH6P52701 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH6P52701 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH6P52701 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC19.71■□□□□ 0.75
MSH6P52701 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC19.71■□□□□ 0.75
MSH6P52701 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC19.71■□□□□ 0.75
MSH6P52701 BAK1P2-201ENST00000532665 631 ntBASIC19.71■□□□□ 0.75
MSH6P52701 MIR4746-201ENST00000579802 71 ntBASIC19.71■□□□□ 0.75
MSH6P52701 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC19.71■□□□□ 0.75
MSH6P52701 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC19.71■□□□□ 0.75
MSH6P52701 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH6P52701 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSH6P52701 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
MSH6P52701 AL008638.4-201ENST00000624792 1315 ntBASIC19.71■□□□□ 0.75
MSH6P52701 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
MSH6P52701 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH6P52701 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSH6P52701 AC013268.4-201ENST00000637413 2228 ntBASIC19.71■□□□□ 0.75
MSH6P52701 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH6P52701 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC19.71■□□□□ 0.75
MSH6P52701 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
MSH6P52701 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH6P52701 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC19.71■□□□□ 0.75
MSH6P52701 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
MSH6P52701 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH6P52701 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC19.71■□□□□ 0.75
MSH6P52701 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
MSH6P52701 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH6P52701 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH6P52701 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC19.7■□□□□ 0.74
MSH6P52701 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 MED15P3-201ENST00000413613 326 ntBASIC19.7■□□□□ 0.74
MSH6P52701 AC147876.1-201ENST00000504408 322 ntBASIC19.7■□□□□ 0.74
MSH6P52701 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 RN7SL524P-201ENST00000581152 300 ntBASIC19.7■□□□□ 0.74
MSH6P52701 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC19.7■□□□□ 0.74
MSH6P52701 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms