Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC18.48■□□□□ 0.55
COL18A1P39060 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC18.48■□□□□ 0.55
COL18A1P39060 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC18.48■□□□□ 0.55
COL18A1P39060 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL18A1P39060 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.48■□□□□ 0.55
COL18A1P39060 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL18A1P39060 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 MPV17-209ENST00000405983 859 ntTSL 5 BASIC18.47■□□□□ 0.55
COL18A1P39060 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL18A1P39060 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC18.47■□□□□ 0.55
COL18A1P39060 TREX1-203ENST00000456089 629 ntTSL 3 BASIC18.47■□□□□ 0.55
COL18A1P39060 AC004801.1-201ENST00000549557 360 ntBASIC18.47■□□□□ 0.55
COL18A1P39060 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC18.47■□□□□ 0.55
COL18A1P39060 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC18.47■□□□□ 0.55
COL18A1P39060 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC18.47■□□□□ 0.55
COL18A1P39060 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.47■□□□□ 0.55
COL18A1P39060 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 AC092384.3-202ENST00000564646 2873 ntBASIC18.47■□□□□ 0.55
COL18A1P39060 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.47■□□□□ 0.55
COL18A1P39060 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC18.47■□□□□ 0.55
COL18A1P39060 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL18A1P39060 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC18.47■□□□□ 0.55
COL18A1P39060 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 AC089987.1-201ENST00000551654 2209 ntBASIC18.47■□□□□ 0.55
COL18A1P39060 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC18.47■□□□□ 0.55
COL18A1P39060 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC18.47■□□□□ 0.55
COL18A1P39060 MIR2278-201ENST00000516344 96 ntBASIC18.47■□□□□ 0.55
COL18A1P39060 GPX3-202ENST00000517973 612 ntTSL 3 BASIC18.47■□□□□ 0.55
COL18A1P39060 AC091304.3-201ENST00000566500 716 ntBASIC18.47■□□□□ 0.55
COL18A1P39060 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC18.47■□□□□ 0.55
COL18A1P39060 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
COL18A1P39060 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC18.47■□□□□ 0.55
COL18A1P39060 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
COL18A1P39060 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL18A1P39060 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.46■□□□□ 0.55
COL18A1P39060 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL18A1P39060 HSPA8P5-201ENST00000456928 2069 ntBASIC18.46■□□□□ 0.55
COL18A1P39060 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
COL18A1P39060 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC18.46■□□□□ 0.55
COL18A1P39060 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 PSME2P2-201ENST00000453033 700 ntBASIC18.46■□□□□ 0.55
COL18A1P39060 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC18.46■□□□□ 0.55
COL18A1P39060 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC18.46■□□□□ 0.55
COL18A1P39060 CTBP2P6-201ENST00000526402 1229 ntBASIC18.46■□□□□ 0.55
COL18A1P39060 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC18.46■□□□□ 0.55
COL18A1P39060 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL18A1P39060 AC123912.6-201ENST00000612657 315 ntBASIC18.46■□□□□ 0.55
COL18A1P39060 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC18.46■□□□□ 0.55
COL18A1P39060 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL18A1P39060 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL18A1P39060 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL18A1P39060 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.46■□□□□ 0.54
COL18A1P39060 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
COL18A1P39060 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC18.46■□□□□ 0.54
COL18A1P39060 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
COL18A1P39060 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL18A1P39060 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL18A1P39060 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL18A1P39060 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL18A1P39060 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.45■□□□□ 0.54
COL18A1P39060 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
COL18A1P39060 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
COL18A1P39060 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL18A1P39060 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
COL18A1P39060 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC18.45■□□□□ 0.54
COL18A1P39060 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms