Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.1□□□□□ -0.15
PCDH1Q08174 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.1□□□□□ -0.15
PCDH1Q08174 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.1□□□□□ -0.15
PCDH1Q08174 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.1□□□□□ -0.15
PCDH1Q08174 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.1□□□□□ -0.15
PCDH1Q08174 CROCCP4-201ENST00000457096 498 ntBASIC14.1□□□□□ -0.15
PCDH1Q08174 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.1□□□□□ -0.15
PCDH1Q08174 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.1□□□□□ -0.15
PCDH1Q08174 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.1□□□□□ -0.15
PCDH1Q08174 AC132192.2-201ENST00000596206 1147 ntBASIC14.1□□□□□ -0.15
PCDH1Q08174 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.1□□□□□ -0.15
PCDH1Q08174 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.1□□□□□ -0.15
PCDH1Q08174 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
PCDH1Q08174 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
PCDH1Q08174 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.1□□□□□ -0.15
PCDH1Q08174 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
PCDH1Q08174 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.1□□□□□ -0.15
PCDH1Q08174 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PCDH1Q08174 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.09□□□□□ -0.15
PCDH1Q08174 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
PCDH1Q08174 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.09□□□□□ -0.15
PCDH1Q08174 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.09□□□□□ -0.15
PCDH1Q08174 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.09□□□□□ -0.15
PCDH1Q08174 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
PCDH1Q08174 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
PCDH1Q08174 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.09□□□□□ -0.15
PCDH1Q08174 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
PCDH1Q08174 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 MIR326-201ENST00000362220 95 ntBASIC14.09□□□□□ -0.15
PCDH1Q08174 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
PCDH1Q08174 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
PCDH1Q08174 AC112492.5-201ENST00000421897 457 ntBASIC14.09□□□□□ -0.15
PCDH1Q08174 AC026954.1-201ENST00000429771 1293 ntBASIC14.09□□□□□ -0.15
PCDH1Q08174 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC14.09□□□□□ -0.15
PCDH1Q08174 HOMER2P2-201ENST00000451621 847 ntBASIC14.09□□□□□ -0.15
PCDH1Q08174 KLF2P4-201ENST00000451959 1225 ntBASIC14.09□□□□□ -0.15
PCDH1Q08174 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.09□□□□□ -0.15
PCDH1Q08174 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
PCDH1Q08174 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.09□□□□□ -0.15
PCDH1Q08174 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
PCDH1Q08174 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.09□□□□□ -0.15
PCDH1Q08174 AC009955.4-201ENST00000597192 544 ntBASIC14.09□□□□□ -0.15
PCDH1Q08174 AL512343.1-201ENST00000605837 169 ntBASIC14.09□□□□□ -0.15
PCDH1Q08174 AL136301.1-201ENST00000615830 422 ntBASIC14.09□□□□□ -0.15
PCDH1Q08174 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.09□□□□□ -0.15
PCDH1Q08174 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 HSPA8P5-201ENST00000456928 2069 ntBASIC14.09□□□□□ -0.15
PCDH1Q08174 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
PCDH1Q08174 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
PCDH1Q08174 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.09□□□□□ -0.15
PCDH1Q08174 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.09□□□□□ -0.15
PCDH1Q08174 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
PCDH1Q08174 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PCDH1Q08174 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
PCDH1Q08174 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
PCDH1Q08174 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.08□□□□□ -0.15
PCDH1Q08174 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
PCDH1Q08174 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
PCDH1Q08174 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms