Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
HDAC4P56524 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC4P56524 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC4P56524 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC4P56524 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.27■□□□□ 0.04
HDAC4P56524 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.27■□□□□ 0.04
HDAC4P56524 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
HDAC4P56524 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.27■□□□□ 0.04
HDAC4P56524 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC15.27■□□□□ 0.04
HDAC4P56524 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.27■□□□□ 0.04
HDAC4P56524 RNA5SP412-201ENST00000516234 123 ntBASIC15.27■□□□□ 0.04
HDAC4P56524 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC4P56524 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.27■□□□□ 0.04
HDAC4P56524 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.27■□□□□ 0.04
HDAC4P56524 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.27■□□□□ 0.04
HDAC4P56524 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC15.27■□□□□ 0.04
HDAC4P56524 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.27■□□□□ 0.04
HDAC4P56524 AC244157.2-201ENST00000616239 1006 ntBASIC15.27■□□□□ 0.04
HDAC4P56524 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.27■□□□□ 0.04
HDAC4P56524 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC4P56524 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC4P56524 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC4P56524 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
HDAC4P56524 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC4P56524 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC4P56524 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.27■□□□□ 0.03
HDAC4P56524 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC4P56524 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC4P56524 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC4P56524 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC4P56524 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
HDAC4P56524 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.27■□□□□ 0.03
HDAC4P56524 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC4P56524 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC15.27■□□□□ 0.03
HDAC4P56524 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC4P56524 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
HDAC4P56524 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC15.26■□□□□ 0.03
HDAC4P56524 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.26■□□□□ 0.03
HDAC4P56524 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
HDAC4P56524 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.26■□□□□ 0.03
HDAC4P56524 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HDAC4P56524 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 GK-202ENST00000378941 458 ntTSL 3 BASIC15.26■□□□□ 0.03
HDAC4P56524 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
HDAC4P56524 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.26■□□□□ 0.03
HDAC4P56524 AC027237.1-201ENST00000560942 655 ntBASIC15.26■□□□□ 0.03
HDAC4P56524 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HDAC4P56524 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.26■□□□□ 0.03
HDAC4P56524 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.26■□□□□ 0.03
HDAC4P56524 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC4P56524 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.26■□□□□ 0.03
HDAC4P56524 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HDAC4P56524 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HDAC4P56524 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HDAC4P56524 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HDAC4P56524 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.25■□□□□ 0.03
HDAC4P56524 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.25■□□□□ 0.03
HDAC4P56524 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HDAC4P56524 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC15.25■□□□□ 0.03
HDAC4P56524 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
HDAC4P56524 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.25■□□□□ 0.03
HDAC4P56524 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 FAM21FP-201ENST00000426241 1131 ntBASIC15.25■□□□□ 0.03
HDAC4P56524 AL645933.1-201ENST00000440087 609 ntBASIC15.25■□□□□ 0.03
HDAC4P56524 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 AC010328.2-201ENST00000597698 1111 ntBASIC15.25■□□□□ 0.03
HDAC4P56524 TMBIM7P-202ENST00000641474 1516 ntBASIC15.25■□□□□ 0.03
HDAC4P56524 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms