Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 GPR53P-205ENST00000457298 1084 ntBASIC15.21■□□□□ 0.03
CDH6P55285 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.21■□□□□ 0.03
CDH6P55285 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.21■□□□□ 0.03
CDH6P55285 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.21■□□□□ 0.03
CDH6P55285 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.21■□□□□ 0.03
CDH6P55285 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.21■□□□□ 0.03
CDH6P55285 AP006547.1-201ENST00000563435 692 ntBASIC15.21■□□□□ 0.03
CDH6P55285 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.21■□□□□ 0.03
CDH6P55285 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.21■□□□□ 0.03
CDH6P55285 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.21■□□□□ 0.03
CDH6P55285 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.21■□□□□ 0.03
CDH6P55285 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC15.21■□□□□ 0.03
CDH6P55285 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH6P55285 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CDH6P55285 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.21■□□□□ 0.03
CDH6P55285 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CDH6P55285 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CDH6P55285 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CDH6P55285 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.21■□□□□ 0.02
CDH6P55285 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15.21■□□□□ 0.02
CDH6P55285 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC15.21■□□□□ 0.02
CDH6P55285 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDH6P55285 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CDH6P55285 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDH6P55285 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
CDH6P55285 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
CDH6P55285 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDH6P55285 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDH6P55285 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.21■□□□□ 0.02
CDH6P55285 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.2■□□□□ 0.02
CDH6P55285 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CDH6P55285 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH6P55285 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH6P55285 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH6P55285 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CDH6P55285 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
CDH6P55285 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.2■□□□□ 0.02
CDH6P55285 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.2■□□□□ 0.02
CDH6P55285 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 AC026954.1-201ENST00000429771 1293 ntBASIC15.2■□□□□ 0.02
CDH6P55285 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH6P55285 HIST2H2BB-201ENST00000449108 381 ntBASIC15.2■□□□□ 0.02
CDH6P55285 HOMER2P2-201ENST00000451621 847 ntBASIC15.2■□□□□ 0.02
CDH6P55285 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.2■□□□□ 0.02
CDH6P55285 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CDH6P55285 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH6P55285 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 TCAM1P-207ENST00000485295 1537 ntBASIC15.2■□□□□ 0.02
CDH6P55285 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CDH6P55285 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH6P55285 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH6P55285 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH6P55285 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CDH6P55285 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
CDH6P55285 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 SHC1P1-201ENST00000425230 1745 ntBASIC15.2■□□□□ 0.02
CDH6P55285 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH6P55285 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH6P55285 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH6P55285 AC011474.4-201ENST00000623523 2076 ntBASIC15.2■□□□□ 0.02
CDH6P55285 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.19■□□□□ 0.02
CDH6P55285 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH6P55285 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
CDH6P55285 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms