Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.43□□□□□ -0.26
NKX2-2O95096 AC005324.6-201ENST00000587972 613 ntBASIC13.43□□□□□ -0.26
NKX2-2O95096 AC021016.3-201ENST00000608367 477 ntBASIC13.43□□□□□ -0.26
NKX2-2O95096 AP000346.4-201ENST00000614827 381 ntBASIC13.43□□□□□ -0.26
NKX2-2O95096 AL096828.3-201ENST00000615354 462 ntBASIC13.43□□□□□ -0.26
NKX2-2O95096 AL023803.2-201ENST00000620080 638 ntBASIC13.43□□□□□ -0.26
NKX2-2O95096 AC133540.1-201ENST00000620845 1019 ntBASIC13.43□□□□□ -0.26
NKX2-2O95096 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-2O95096 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX2-2O95096 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.43□□□□□ -0.26
NKX2-2O95096 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
NKX2-2O95096 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
NKX2-2O95096 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-2O95096 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-2O95096 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.43□□□□□ -0.26
NKX2-2O95096 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-2O95096 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-2O95096 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX2-2O95096 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-2O95096 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-2O95096 KRT8P29-201ENST00000420409 1371 ntBASIC13.43□□□□□ -0.26
NKX2-2O95096 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX2-2O95096 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-2O95096 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-2O95096 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX2-2O95096 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
NKX2-2O95096 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-2O95096 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX2-2O95096 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
NKX2-2O95096 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 LAP3P2-201ENST00000454686 1454 ntBASIC13.42□□□□□ -0.26
NKX2-2O95096 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX2-2O95096 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX2-2O95096 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 CYP4F23P-201ENST00000593402 1579 ntBASIC13.42□□□□□ -0.26
NKX2-2O95096 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
NKX2-2O95096 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX2-2O95096 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 GK-202ENST00000378941 458 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX2-2O95096 USP17L6P-201ENST00000382470 1197 ntBASIC13.42□□□□□ -0.26
NKX2-2O95096 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 WBP2-203ENST00000433525 928 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX2-2O95096 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
NKX2-2O95096 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX2-2O95096 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 AC003686.1-201ENST00000550956 1034 ntBASIC13.42□□□□□ -0.26
NKX2-2O95096 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.42□□□□□ -0.26
NKX2-2O95096 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX2-2O95096 AC005730.2-201ENST00000564549 1184 ntBASIC13.42□□□□□ -0.26
NKX2-2O95096 AC124068.2-201ENST00000569473 1109 ntBASIC13.42□□□□□ -0.26
NKX2-2O95096 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX2-2O95096 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX2-2O95096 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.42□□□□□ -0.26
NKX2-2O95096 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX2-2O95096 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX2-2O95096 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.42□□□□□ -0.26
NKX2-2O95096 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX2-2O95096 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC13.42□□□□□ -0.26
NKX2-2O95096 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX2-2O95096 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
NKX2-2O95096 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
NKX2-2O95096 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
NKX2-2O95096 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-2O95096 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-2O95096 BEND3P1-201ENST00000421591 1944 ntBASIC13.41□□□□□ -0.26
NKX2-2O95096 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-2O95096 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX2-2O95096 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms