Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 NAT9-204ENST00000578822 839 ntTSL 3 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 MIR4640-201ENST00000581824 90 ntBASIC23.19■■□□□ 1.3
IFT140Q96RY7 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC23.19■■□□□ 1.3
IFT140Q96RY7 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
IFT140Q96RY7 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
IFT140Q96RY7 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
IFT140Q96RY7 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
IFT140Q96RY7 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
IFT140Q96RY7 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
IFT140Q96RY7 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
IFT140Q96RY7 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
IFT140Q96RY7 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC23.18■■□□□ 1.3
IFT140Q96RY7 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
IFT140Q96RY7 SNU13-204ENST00000402458 462 ntTSL 3 BASIC23.18■■□□□ 1.3
IFT140Q96RY7 SNORD88B-201ENST00000408454 91 ntBASIC23.18■■□□□ 1.3
IFT140Q96RY7 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
IFT140Q96RY7 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC23.18■■□□□ 1.3
IFT140Q96RY7 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
IFT140Q96RY7 IGHVII-74-1-201ENST00000517572 241 ntBASIC23.18■■□□□ 1.3
IFT140Q96RY7 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
IFT140Q96RY7 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
IFT140Q96RY7 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC23.18■■□□□ 1.3
IFT140Q96RY7 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
IFT140Q96RY7 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
IFT140Q96RY7 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
IFT140Q96RY7 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
IFT140Q96RY7 AC136621.1-201ENST00000624017 2304 ntBASIC23.18■■□□□ 1.3
IFT140Q96RY7 BCL2-203ENST00000589955 5011 ntBASIC23.18■■□□□ 1.3
IFT140Q96RY7 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
IFT140Q96RY7 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
IFT140Q96RY7 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
IFT140Q96RY7 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
IFT140Q96RY7 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC23.18■■□□□ 1.3
IFT140Q96RY7 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
IFT140Q96RY7 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC23.18■■□□□ 1.3
IFT140Q96RY7 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
IFT140Q96RY7 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
IFT140Q96RY7 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
IFT140Q96RY7 POP5-201ENST00000341039 913 ntTSL 2 BASIC23.17■■□□□ 1.3
IFT140Q96RY7 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
IFT140Q96RY7 OR7E12P-201ENST00000344740 973 ntBASIC23.17■■□□□ 1.3
IFT140Q96RY7 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC23.17■■□□□ 1.3
IFT140Q96RY7 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC23.17■■□□□ 1.3
IFT140Q96RY7 RN7SL794P-201ENST00000469816 280 ntBASIC23.17■■□□□ 1.3
IFT140Q96RY7 AF186996.6-201ENST00000485294 149 ntBASIC23.17■■□□□ 1.3
IFT140Q96RY7 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC23.17■■□□□ 1.3
IFT140Q96RY7 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC23.17■■□□□ 1.3
IFT140Q96RY7 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC23.17■■□□□ 1.3
IFT140Q96RY7 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC23.17■■□□□ 1.3
IFT140Q96RY7 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
IFT140Q96RY7 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
IFT140Q96RY7 AC079328.2-201ENST00000561241 3354 ntBASIC23.17■■□□□ 1.3
IFT140Q96RY7 KRT8P38-201ENST00000441370 1430 ntBASIC23.17■■□□□ 1.3
IFT140Q96RY7 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
IFT140Q96RY7 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
IFT140Q96RY7 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
IFT140Q96RY7 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
IFT140Q96RY7 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
IFT140Q96RY7 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
IFT140Q96RY7 RBP4-203ENST00000371469 814 ntTSL 5 BASIC23.17■■□□□ 1.3
IFT140Q96RY7 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
IFT140Q96RY7 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
IFT140Q96RY7 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC23.17■■□□□ 1.3
IFT140Q96RY7 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC23.17■■□□□ 1.3
IFT140Q96RY7 ALDOAP1-201ENST00000491506 1078 ntBASIC23.17■■□□□ 1.3
IFT140Q96RY7 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC23.17■■□□□ 1.3
IFT140Q96RY7 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC23.16■■□□□ 1.3
IFT140Q96RY7 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
IFT140Q96RY7 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC23.16■■□□□ 1.3
IFT140Q96RY7 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
IFT140Q96RY7 AL139158.3-201ENST00000641212 1562 ntBASIC23.16■■□□□ 1.3
IFT140Q96RY7 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
IFT140Q96RY7 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
IFT140Q96RY7 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC23.16■■□□□ 1.3
IFT140Q96RY7 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
IFT140Q96RY7 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC23.16■■□□□ 1.3
IFT140Q96RY7 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
IFT140Q96RY7 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
IFT140Q96RY7 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC23.16■■□□□ 1.3
IFT140Q96RY7 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC23.16■■□□□ 1.3
IFT140Q96RY7 MIR4326-201ENST00000582203 59 ntBASIC23.16■■□□□ 1.3
IFT140Q96RY7 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC23.16■■□□□ 1.3
IFT140Q96RY7 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC23.16■■□□□ 1.3
IFT140Q96RY7 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
IFT140Q96RY7 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC23.16■■□□□ 1.3
IFT140Q96RY7 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
IFT140Q96RY7 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
IFT140Q96RY7 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
IFT140Q96RY7 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
IFT140Q96RY7 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
IFT140Q96RY7 PTN-202ENST00000393083 1599 ntTSL 5 BASIC23.16■■□□□ 1.3
IFT140Q96RY7 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms