Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 AL513477.1-201ENST00000602865 2407 ntBASIC11.76□□□□□ -0.53
VPS13CQ709C8 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 OR51A9P-201ENST00000422578 911 ntBASIC11.76□□□□□ -0.53
VPS13CQ709C8 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 AC215219.1-201ENST00000400706 1817 ntBASIC11.76□□□□□ -0.53
VPS13CQ709C8 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 AP003040.1-201ENST00000532044 1024 ntBASIC11.76□□□□□ -0.53
VPS13CQ709C8 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 SIGLEC22P-201ENST00000599104 714 ntBASIC11.76□□□□□ -0.53
VPS13CQ709C8 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC11.76□□□□□ -0.53
VPS13CQ709C8 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13CQ709C8 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC11.75□□□□□ -0.53
VPS13CQ709C8 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC11.75□□□□□ -0.53
VPS13CQ709C8 NME2-201ENST00000393183 568 ntTSL 2 BASIC11.75□□□□□ -0.53
VPS13CQ709C8 KRT8P30-201ENST00000432100 650 ntBASIC11.75□□□□□ -0.53
VPS13CQ709C8 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC11.75□□□□□ -0.53
VPS13CQ709C8 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC11.75□□□□□ -0.53
VPS13CQ709C8 RN7SL602P-201ENST00000578326 324 ntBASIC11.75□□□□□ -0.53
VPS13CQ709C8 RN7SL718P-201ENST00000581254 303 ntBASIC11.75□□□□□ -0.53
VPS13CQ709C8 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC11.75□□□□□ -0.53
VPS13CQ709C8 AC016582.2-202ENST00000587765 1094 ntBASIC11.75□□□□□ -0.53
VPS13CQ709C8 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
VPS13CQ709C8 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
VPS13CQ709C8 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 GGTLC4P-201ENST00000402176 664 ntBASIC11.75□□□□□ -0.53
VPS13CQ709C8 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
VPS13CQ709C8 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC11.75□□□□□ -0.53
VPS13CQ709C8 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC11.75□□□□□ -0.53
VPS13CQ709C8 GOLGA6L16P-201ENST00000441780 1299 ntBASIC11.75□□□□□ -0.53
VPS13CQ709C8 AC106782.5-201ENST00000616011 337 ntBASIC11.75□□□□□ -0.53
VPS13CQ709C8 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13CQ709C8 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC11.74□□□□□ -0.53
VPS13CQ709C8 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13CQ709C8 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC11.74□□□□□ -0.53
VPS13CQ709C8 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13CQ709C8 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC11.74□□□□□ -0.53
VPS13CQ709C8 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC11.74□□□□□ -0.53
VPS13CQ709C8 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13CQ709C8 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms