Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC12.24□□□□□ -0.45
HOXA1P49639 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC12.24□□□□□ -0.45
HOXA1P49639 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC12.24□□□□□ -0.45
HOXA1P49639 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC12.24□□□□□ -0.45
HOXA1P49639 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
HOXA1P49639 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC12.24□□□□□ -0.45
HOXA1P49639 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC12.24□□□□□ -0.45
HOXA1P49639 AC012531.1-201ENST00000562848 2680 ntBASIC12.24□□□□□ -0.45
HOXA1P49639 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
HOXA1P49639 SAMD11P1-201ENST00000571429 661 ntBASIC12.24□□□□□ -0.45
HOXA1P49639 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC12.24□□□□□ -0.45
HOXA1P49639 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC12.24□□□□□ -0.45
HOXA1P49639 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
HOXA1P49639 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC12.24□□□□□ -0.45
HOXA1P49639 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC12.24□□□□□ -0.45
HOXA1P49639 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 BDH1-201ENST00000358186 3330 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
HOXA1P49639 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXA1P49639 AL031719.1-201ENST00000623365 2587 ntBASIC12.24□□□□□ -0.45
HOXA1P49639 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXA1P49639 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 AC023090.2-201ENST00000625182 2110 ntBASIC12.23□□□□□ -0.45
HOXA1P49639 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HOXA1P49639 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HOXA1P49639 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXA1P49639 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
HOXA1P49639 PLEKHG3-203ENST00000471182 3106 ntTSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 AC104457.1-201ENST00000401024 814 ntBASIC12.23□□□□□ -0.45
HOXA1P49639 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC12.23□□□□□ -0.45
HOXA1P49639 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC12.23□□□□□ -0.45
HOXA1P49639 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXA1P49639 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC12.23□□□□□ -0.45
HOXA1P49639 YBX1P5-201ENST00000509441 847 ntBASIC12.23□□□□□ -0.45
HOXA1P49639 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC12.23□□□□□ -0.45
HOXA1P49639 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC12.23□□□□□ -0.45
HOXA1P49639 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC12.23□□□□□ -0.45
HOXA1P49639 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 AP001059.3-201ENST00000619053 235 ntBASIC12.23□□□□□ -0.45
HOXA1P49639 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC12.23□□□□□ -0.45
HOXA1P49639 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
HOXA1P49639 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC12.23□□□□□ -0.45
HOXA1P49639 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 AC026992.2-203ENST00000563004 2419 ntBASIC12.23□□□□□ -0.45
HOXA1P49639 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXA1P49639 MAGED2-207ENST00000396224 2026 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 IMMT-204ENST00000410111 3001 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXA1P49639 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXA1P49639 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXA1P49639 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXA1P49639 DNAJB12-201ENST00000338820 4360 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXA1P49639 MKNK1-201ENST00000341183 2612 ntTSL 5 BASIC12.23□□□□□ -0.45
HOXA1P49639 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HOXA1P49639 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms