Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 ACVR2A-201ENST00000241416 5728 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 TLR6-202ENST00000436693 5880 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DQA1P01909 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 MTMR2-201ENST00000346299 4681 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 MTMR2-203ENST00000393223 4681 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 LDB3-205ENST00000429277 5436 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 CYB5RL-201ENST00000287899 5777 ntTSL 3 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 ARID4A-202ENST00000355431 5891 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 NEK7-201ENST00000367383 586 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 PP14571-201ENST00000404327 934 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 AC074386.1-202ENST00000463561 864 ntBASIC11.05□□□□□ -0.64
HLA-DQA1P01909 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 AC112191.1-201ENST00000523689 701 ntBASIC11.05□□□□□ -0.64
HLA-DQA1P01909 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 KCNJ5-202ENST00000529694 5940 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 AC040169.1-201ENST00000565382 521 ntBASIC11.05□□□□□ -0.64
HLA-DQA1P01909 SAMD11P1-201ENST00000571429 661 ntBASIC11.05□□□□□ -0.64
HLA-DQA1P01909 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 TBCB-211ENST00000589996 724 ntTSL 3 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 SNX33-201ENST00000308527 8008 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 KRT8P35-201ENST00000483942 1338 ntBASIC11.05□□□□□ -0.64
HLA-DQA1P01909 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 PPP6C-203ENST00000451402 4349 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 AC010970.1-201ENST00000445125 1848 ntBASIC11.05□□□□□ -0.64
HLA-DQA1P01909 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DQA1P01909 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 IRAK1BP1-201ENST00000369940 5656 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 SEMA6D-202ENST00000354744 5931 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DQA1P01909 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms