Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 AC092933.1-201ENST00000393644 945 ntBASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 C2orf27AP3-201ENST00000434123 579 ntBASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 RN7SL752P-201ENST00000463779 287 ntBASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 AC027307.3-201ENST00000594262 1100 ntBASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 AL354718.3-201ENST00000616414 581 ntBASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 CR382287.1-201ENST00000623954 586 ntBASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HIF3AQ9Y2N7 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 CICP16-201ENST00000502609 2813 ntBASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 AC004945.1-201ENST00000416738 983 ntBASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 CD8B2-202ENST00000417670 633 ntBASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 ARSEP1-201ENST00000420443 635 ntBASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 USP32P1-208ENST00000506594 1164 ntBASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 AP003171.2-201ENST00000528208 925 ntBASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 POLE2-203ENST00000553805 496 ntTSL 2 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 AC025048.6-201ENST00000634326 1161 ntBASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 DMBT1P1-203ENST00000636837 4628 ntBASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 AL031595.1-201ENST00000623969 4709 ntBASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms