Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC16.3■□□□□ 0.2
CCSER1Q9C0I3 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 USP17L6P-201ENST00000382470 1197 ntBASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 FAM21FP-201ENST00000426241 1131 ntBASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 AC003686.1-201ENST00000550956 1034 ntBASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 AL160314.3-201ENST00000556041 767 ntBASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 AC010328.2-201ENST00000597698 1111 ntBASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 AC144522.1-201ENST00000625111 1658 ntBASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 CYP4F23P-201ENST00000593402 1579 ntBASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.29■□□□□ 0.2
CCSER1Q9C0I3 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 OR2I1P-209ENST00000641730 5365 ntBASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 AC005962.1-201ENST00000584100 773 ntBASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 AC005324.6-201ENST00000587972 613 ntBASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 AC009542.2-202ENST00000619004 1067 ntBASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 LAP3P2-201ENST00000454686 1454 ntBASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CCSER1Q9C0I3 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CCSER1Q9C0I3 AC005840.4-201ENST00000541242 2494 ntBASIC16.27■□□□□ 0.2
CCSER1Q9C0I3 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCSER1Q9C0I3 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCSER1Q9C0I3 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCSER1Q9C0I3 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms