Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 AC007389.4-201ENST00000454674 793 ntBASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 SNX29P1-201ENST00000548357 1007 ntBASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 CLK3P2-201ENST00000427566 1453 ntBASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.89□□□□□ -0.03
TRIM55Q9BYV6 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 AL356585.2-201ENST00000625078 2396 ntBASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 AC234783.1-201ENST00000441761 496 ntBASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 TIMM17BP1-201ENST00000545713 516 ntBASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 AC008735.3-201ENST00000596646 500 ntBASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 TMEM261P1-201ENST00000604899 340 ntBASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM55Q9BYV6 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 SLC6A6P1-201ENST00000413933 1850 ntBASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM55Q9BYV6 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms