Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 AL157407.1-201ENST00000435784 904 ntBASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 RNMTL1P1-201ENST00000454103 560 ntBASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 AC005695.3-201ENST00000614522 232 ntBASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.4■□□□□ 0.06
SCUBE3Q8IX30 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
SCUBE3Q8IX30 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AC005089.1-201ENST00000619486 2241 ntBASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 SMS-201ENST00000379404 1174 ntTSL 3 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AL645933.1-201ENST00000440087 609 ntBASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 PFN1P12-201ENST00000455938 534 ntBASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AC099548.2-209ENST00000480264 625 ntBASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 SORD2P-201ENST00000558556 1069 ntBASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 MIR6074-201ENST00000612054 107 ntBASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 Z98259.2-201ENST00000641583 609 ntBASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AC027601.5-201ENST00000624065 2482 ntBASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AL008718.2-201ENST00000609206 1313 ntBASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.39■□□□□ 0.05
SCUBE3Q8IX30 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms